系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV041501
发布时间:
2016-09-12
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
GCCDC1 356
毒株别名:
-
病毒说明:
Rousettus bat coronavirus isolate GCCDC1 356, complete genome
物种名称:
Rousettus bat coronavirus
物种ID:
1892416
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Nobecovirus, Rousettus bat coronavirus GCCDC1, Rousettus bat coronavirus]
序列长度:
30161
有效碱基数量:
30161
有效碱基百分比:
100.00%
宿主:
Rousettus leschenaultii
宿主补充信息:
-
分离来源:
feces
测序技术:
Sanger dideoxy sequencing; IonTorrent
组装方法:
IDBA-UD v. 2011
覆盖度:
-
相关链接:
NC_030886
提交者:
Huang,C., Liu,J., Xu,W., Jin,T., Shi,Y., Ji,W., Jia,H., Zhou,Y., Wen,H., Zhao,H., Liu,H., Li,H., Wang,Q., Wu,Y., Wang,L., Liu,D., Liu,G., Yu,H., Holmes,E., Lu,L. and Gao,G.F.
提交者单位:
National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention
提交者地址:
Changbai Road, Changping District, Beijing 102206, China
样本信息
编号:
OESV041501
采样时间:
2014-05-28
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020