系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV1072261
发布时间:
2021-03-19
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Italy/CAM-AMES-43-64/2021
毒株别名:
-
病毒说明:
hCoV-19/Italy/CAM-AMES-43-64/2021
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29870
有效碱基数量:
29870
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Oropharyngeal swab
测序技术:
Illumina NovaSeq
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_1299193
提交者:
"Giovanni Savarese, Raffaella Ruggiero, Eloisa Evangelista, Antonella Di Carlo, Luisa Circelli, Luigi D'Amore, Nadia Petrillo, Monica Ianniello, Roberto Sirica, Maurizio D'Amora, Antonio Fico"
提交者单位:
AMES Centro Polidiagnostico Strumentale S.r.l.
提交者地址:
"Via Padre Carmine Fico 24, Casalnuovo di Napoli"
样本信息
编号:
OESV1072261
采样时间:
2021-03-06
采样地点:
Europe / Italy / Campania / Napoli
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
43
采样单位:
ASL Napoli 1 Centro
采样地址:
"Strada Comunale del Principe, 13/a, 80145 Napoli NA"
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020