系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV1130660
发布时间:
2021-03-29
基因组完整性:
partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene, partial cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
277
有效碱基数量:
277
有效碱基百分比:
100.00%
宿主:
wastewater metagenome
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina
组装方法:
Deblur package v. 1.1.0
覆盖度:
-
相关链接:
MT925975
提交者:
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
提交者单位:
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
提交者地址:
Roberto Sampaio Gonzaga Street, Florianopolis, Santa Catarina 88040-900, Brazil
样本信息
编号:
OESV1130660
采样时间:
2020-03-04
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020