系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV120974
发布时间:
2020-01-31
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate Australia/VIC01/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate Australia/VIC01/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29893
有效碱基数量:
29893
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina; Nanopore
组装方法:
Minimap v. 2.17; Geneious Prime v. 2019.2.1; Shovill v. 1.0.9
覆盖度:
260000
相关链接:
MT007544
提交者:
Caly,L., Seemann,T., Schultz,M., Druce,J. and Taiaroa,G.
提交者单位:
Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity
提交者地址:
792 Elizabeth Street, Melbourne, VIC 3000, Australia
样本信息
编号:
OESV120974
采样时间:
2020-01-25
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020