系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV120980
发布时间:
2020-02-11
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate HZ-1
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate HZ-1, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29833
有效碱基数量:
29833
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
lung, oronasopharynx
测序技术:
Illumina
组装方法:
bwa v. 0.7.17-r1188; samtools v. 1.9
覆盖度:
5037x
相关链接:
MT039873
提交者:
Yu,H., Li,J., Yu,X., Wang,H. and Pan,J.
提交者单位:
Microbiology Detection Department, Hangzhou Center for Disease Control and Prevention
提交者地址:
Mingshi Road 568, Hangzhou, Zhejiang 310021, China
样本信息
编号:
OESV120980
采样时间:
2020-01-20
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020