系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV126434
发布时间:
2016-01-05
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Swine enteric coronavirus strain Italy/213306/2009
毒株别名:
-
病毒说明:
Swine enteric coronavirus strain Italy/213306/2009, complete genome
物种名称:
Swine enteric coronavirus
物种ID:
1766554
属名:
Alphacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Alphacoronavirus, Tegacovirus, Alphacoronavirus 1, Swine enteric coronavirus]
序列长度:
28111
有效碱基数量:
28111
有效碱基百分比:
100.00%
宿主:
Sus scrofa
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina
组装方法:
SeqMan Pro DNASTAR Lasergene 10 Core Suite v. 10.0.1
覆盖度:
-
相关链接:
NC_028806
提交者:
Boniotti,M.B., Papetti,A., Lavazza,A., Alborali,G., Sozzi,E., Chiapponi,C., Faccini,S., Bonilauri,P., Cordioli,P. and Marthaler,D.
提交者单位:
Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna
提交者地址:
Via A. Bianchi 9, Brescia, BS 25124, Italy
样本信息
编号:
OESV126434
采样时间:
2009-09-04
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020