系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV142373
发布时间:
2020-03-13
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Chile/RM-ISPCH-2/2020
毒株别名:
-
病毒说明:
hCoV-19/Chile/RM-ISPCH-2/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29796
有效碱基数量:
29796
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Travel to Italy
分离来源:
-
测序技术:
Illumina Miseq
组装方法:
IRMA v.0.9.3
覆盖度:
1,000x
相关链接:
EPI_ISL_414580
提交者:
Andrés E. Castillo, Bárbara Parra, Paz Tapia, Alejandra Acevedo, Jaime Lagos, Winston Andrade, Loredana Arata, Gabriel Leal, Gisselle Barra, Carolina Tambley, Javier Tognarelli, Patricia Bustos, Soledad Ulloa, Rodrigo Fasce, Jorge Fernández.
提交者单位:
Instituto de Salud Publica de Chile
提交者地址:
Avenida Marathon 1000, Nunoa7780050 SantiagoChile
样本信息
编号:
OESV142373
采样时间:
2020-03-05
采样地点:
South America / Chile / Region Metropolitana de Santiago / Santiago
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
40
采样单位:
Clinica Santa Maria, Santiago, Chile
采样地址:
Av. Santa María 0500, Providencia, Region Metropolitana, Chile
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020