系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV142388
发布时间:
2020-03-15
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Finland/FIN-313/2020
毒株别名:
-
病毒说明:
hCoV-19/Finland/FIN-313/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29793
有效碱基数量:
29793
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasopharyngeal swap
测序技术:
Illumina Miseq
组装方法:
BWA-MEM
覆盖度:
-
相关链接:
EPI_ISL_414641
提交者:
Teemu Smura, Hannimari Kallio-Kokko, Olli Vapalahti
提交者单位:
Department of Virology, Faculty of Medicine, University of Helsinki, Helsinki, Finland
提交者地址:
University of Helsinki, Medicum, Haartmaninkatu 3, 00290 Helsinki, Finland
样本信息
编号:
OESV142388
采样时间:
2020-03-05
采样地点:
Europe / Finland
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
49
采样单位:
Department of Virology and Immunology, University of Helsinki and Helsinki University Hospital, Huslab Finland
采样地址:
Topeliuksenkatu 32, PL 720, 00029 HUS, Finland
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020