系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV142442
发布时间:
2020-03-13
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/Ireland/LK-NVRL-19933/2020
毒株别名:
-
病毒说明:
hCoV-19/Ireland/LK-NVRL-19933/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
28930
有效碱基百分比:
97.14%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Swab
测序技术:
MinION
组装方法:
-
覆盖度:
330x (average)
相关链接:
EPI_ISL_414585
提交者:
Michael Carr, Gabriel Gonzalez, Jonathan Dean, Suzie Coughlan, Alison Murphy, Kevin Byrne, Ken Wolfe, Jeff Connell, Brendan Loftus, Cillian F De Gascun
提交者单位:
UCD National Virus Reference Laboratory
提交者地址:
University College DublinBelfieldDublin 4Ireland
样本信息
编号:
OESV142442
采样时间:
2020-03-03
采样地点:
Europe / Ireland / Limerick
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
11
采样单位:
UCD National Virus Reference Laboratory
采样地址:
University College DublinBelfieldDublin 4Ireland
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020