系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV143752
发布时间:
2020-04-06
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Belgium/DVBJ-030468/2020
毒株别名:
-
病毒说明:
hCoV-19/Belgium/DVBJ-030468/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
29782
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Oro-pharyngeal swab
测序技术:
Nanopore MinION
组装方法:
Guppy, CLC Genomics Workbench 20, Porechop, Medaka.
覆盖度:
12,845x
相关链接:
EPI_ISL_420324
提交者:
Joan Marti-Carreras, Bert Vanmechelen, Tony Wawina, Piet Maes
提交者单位:
KU Leuven, Clinical and Epidemiological Virology
提交者地址:
Rega Institute, Herestraat 49 Box 1040, BE3000 Leuven, Belgium
样本信息
编号:
OESV143752
采样时间:
2020-03-04
采样地点:
Europe / Belgium / Braine-le-Chateau
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
43
采样单位:
KU Leuven, Clinical and Epidemiological Virology
采样地址:
Rega Institute, Herestraat 49 Box 1040, BE3000 Leuven, Belgium
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020