系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV144079
发布时间:
2020-04-14
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Canada/ON_ON-VIDO-01-2/2020
毒株别名:
-
病毒说明:
hCoV-19/Canada/ON_ON-VIDO-01-2/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29829
有效碱基数量:
29829
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Nanopore minION
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_425177
提交者:
Amrit S. Boese, Nikesh Tailor, Anders Leung, Joshua Quick, Shari Tyson, Morag Graham, Jonathan Audet, Natalie Knox, Darwyn Kobasa
提交者单位:
Public Health Agency of Canada - National Microbiology Laboratory
提交者地址:
1015 Arlington StreetWinnipeg, MBCANADAR3E 3P2
样本信息
编号:
OESV144079
采样时间:
2020-01-23
采样地点:
North America / Canada / Ontario
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
-
采样单位:
Public Health Ontario
采样地址:
661 University AvenueToronto, ONCANADAM5G 1M1
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020