系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV1470672
发布时间:
2021-04-23
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/bat/China/RmYN07/2020
毒株别名:
-
病毒说明:
hCoV-19/bat/China/RmYN07/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29734
有效碱基数量:
29734
有效碱基百分比:
100.00%
宿主:
Rhinolophus malayanus
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NovaSeq6000
组装方法:
MEGAHIT v1.2.9/coronaSPAdes v3.15.0
覆盖度:
-
相关链接:
EPI_ISL_1699447
提交者:
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen
提交者单位:
Shandong First Medical University & Shandong Academy of Medical Sciences
提交者地址:
Yingshengdonglu 2, Taian 271000, Shandong, China
样本信息
编号:
OESV1470672
采样时间:
2020-06-03
采样地点:
Asia / China / Yunnan / Xishuangbanna
地点补充信息:
-
采样单位:
Shandong First Medical University & Shandong Academy of Medical Sciences
采样地址:
Yingshengdonglu 2, Taian 271000, Shandong, China
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020