系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV152541
发布时间:
2020-04-18
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/USA/WI-UW-151/2020
毒株别名:
-
病毒说明:
hCoV-19/USA/WI-UW-151/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
29782
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasal swab
测序技术:
Nanopore GridION -- ARTIC protocol
组装方法:
custom -- minimap2
覆盖度:
400x
相关链接:
EPI_ISL_427458
提交者:
Gage Moreno, Katarina Braun, et al. AIDS Vaccine Research Laboratories
提交者单位:
University of Wisconsin-Madison AIDS Vaccine Research Laboratories
提交者地址:
555 Science Drive Madison WI 53711
样本信息
编号:
OESV152541
采样时间:
2020-04-08
采样地点:
North America / USA / Wisconsin / Dane County
地点补充信息:
-
采样单位:
University of Wisconsin-Madison AIDS Vaccine Research Laboratories
采样地址:
555 Science Drive Madison WI 53711
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020