系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV156124
发布时间:
2020-05-06
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Taiwan/TSGH-23/2020
毒株别名:
-
病毒说明:
hCoV-19/Taiwan/TSGH-23/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29903
有效碱基数量:
29903
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NovaSeq 6000
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_436108
提交者:
Cherng-Lih Perng, Ming-Jr JIAN, Chih-Kai Chang, Jung-Chung Lin, Kuo-Ming Yeh, Chien-Wen Chen, Sheng-Kang Chiu, Hsing-Yi Chung, Shih-Hung Tsai, Kuo-Sheng Hung, Tien-Yao Chang, Feng-Yee Chang, Hung-Sheng Shang
提交者单位:
TSGH-CP molecular lab
提交者地址:
No. 325, Sec.2, Chenggong Road, Neihu District, Taipei City, Taiwan (Postal code:11490) Division of Clinical Pathology, Department of Pathology
样本信息
编号:
OESV156124
采样时间:
2020-04-02
采样地点:
Asia / Taiwan / Taipei
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
21
采样单位:
TSGH-CP molecular lab
采样地址:
No. 325, Sec.2, Chenggong Road, Neihu District, Taipei City, Taiwan (Postal code:11490) Division of Clinical Pathology, Department of Pathology
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020