系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV159593
发布时间:
2020-05-08
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/env/USA/MT-BWRF-0327/2020
毒株别名:
-
病毒说明:
hCoV-19/env/USA/MT-BWRF-0327/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29659
有效碱基数量:
29458
有效碱基百分比:
99.32%
宿主:
environmental samples
宿主补充信息:
Wastewater
分离来源:
Wastewater
测序技术:
Nanopore
组装方法:
artic-ncov2019 pipeline
覆盖度:
6,875x (average)
相关链接:
EPI_ISL_437434
提交者:
Artem Nemudryi, Anna Nemudraia, Kevin Surya, Tanner Wiegand, Murat Buyukyoruk, Royce Wilkinson, Blake Wiedenheft
提交者单位:
Wiedenheft lab, Montana State University
提交者地址:
109 Lewis Hall, Bozeman, MT, 59717
样本信息
编号:
OESV159593
采样时间:
2020-03-27
采样地点:
North America / USA / Montana
地点补充信息:
Bozeman Water Reclamation Facility
采样单位:
Bozeman Water Reclamation Facility
采样地址:
2245 Springhill Rd, Bozeman, MT, 59715
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020