系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV16552713
发布时间:
2022-04-18
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Canine/IND/A4N_Dog_Gujarat_India/2021
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Canine/IND/A4N_Dog_Gujarat_India/2021, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29816
有效碱基数量:
29816
有效碱基百分比:
100.00%
宿主:
Canis lupus familiaris
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
IonTorrent
组装方法:
CLC genomics workbench v. V 12.0.3; Pangolin v. V 3.1.7
覆盖度:
-
相关链接:
ON248600
提交者:
Kumar,D., Vora,D., Antiya,S.P., Patel,S., Sharma,K., Pandit,R., Chauhan,H.C., Joshi,M., Joshi,C.G. and Patel,A.C.
提交者单位:
Department of Veterianry Microbiology, College of Veterinary Science & A.H., Kamdhenu University, Department of Veterinary Microbiology, College of Veterinary Sci. & A.H., Kamdhenu University
提交者地址:
Palanpur, Gujarat 385506, India
样本信息
编号:
OESV16552713
采样时间:
2021-05-26
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020