系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV165942
发布时间:
2020-05-12
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Saudi Arabia/KAUST-Jeddah60/2020
毒株别名:
-
病毒说明:
hCoV-19/Saudi Arabia/KAUST-Jeddah60/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29903
有效碱基数量:
29903
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina MiSeq
组装方法:
Amplicon gatk bcftools consensus
覆盖度:
225x
相关链接:
EPI_ISL_443182
提交者:
Sara Mfarrej,Raeece Naeem,Sharif Hala,Amit Subudhi,Fathia Rached,Arnab Pain
提交者单位:
Pathogen Genomics Lab King Abdullah University of Science and Technology(KAUST)
提交者地址:
4700 King Abdullah University of Science and Technology(KAUST),Thuwal, 23955-6900, Saudi Arabia
样本信息
编号:
OESV165942
采样时间:
2020-04-01
采样地点:
Asia / Saudi Arabia / Jeddah
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
-
采样单位:
Pathogen Genomics Lab King Abdullah University of Science and Technology(KAUST)
采样地址:
4700 King Abdullah University of Science and Technology(KAUST),Thuwal, 23955-6900, Saudi Arabia
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020