系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV17087386
发布时间:
2022-03-24
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Vero/RUS/Dubrovka-ca-B4/2021
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Vero/RUS/Dubrovka-ca-B4/2021, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29785
有效碱基数量:
29784
有效碱基百分比:
100.00%
宿主:
Vero
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Nanopore sequencing
组装方法:
Minimap2 v. 2.24
覆盖度:
-
相关链接:
ON059701
提交者:
Faizuloev,E., Korchevaya,E. and Petrusha,O.
提交者单位:
Virology, Mechnikov Research Institute of Vaccines & Sera
提交者地址:
Malyi Kazennyi pereulok 5a, Moscow 105064, Russia
样本信息
编号:
OESV17087386
采样时间:
2021-04-05
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020