系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV17087390
发布时间:
2022-06-22
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/BGD/BCSIR-BSMMU-30/2022
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/BGD/BCSIR-BSMMU-30/2022, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29789
有效碱基数量:
29758
有效碱基百分比:
99.90%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
DRAGEN RNA Pathogen Detection v. 3.5.14
覆盖度:
-
相关链接:
ON810540
提交者:
Sarkar,M.M.H., Habib,M.A., Akter,S., Banu,T.A., Goswami,B., Jahan,I., Chowdhury,S.F., Naser,S.R., Uddin,M.M., Islam,M.K., Uzzaman,M.S., Osman,E., Ahmed,M.S., Rahman,M.A., Nessa,A., Rahman,M.H., Shaikh,M.A.A. and Khan,M.S.
提交者单位:
Genomic Research Laboratory, Bangladesh Council of Scientific and Industrial Research
提交者地址:
Dr. Qudrat-I-Khuda Road, Dhanmondi, Dhaka 1205, Bangladesh
样本信息
编号:
OESV17087390
采样时间:
2022-01-27
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020