系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV17097523
发布时间:
2022-06-22
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AF10262/2022
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AF10262/2022, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29687
有效碱基数量:
29666
有效碱基百分比:
99.93%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
ONT
组装方法:
Clear Labs BIP-Wv7 v. Clear Labs BIP-Wv7
覆盖度:
-
相关链接:
ON811099
提交者:
Garrigues,J.M., Hemarajata,P. and Green,N.M.
提交者单位:
Los Angeles County Public Health Laboratories, Los Angeles County Public Health Lab microbial pathogen submission group
提交者地址:
12750 Erickson Avenue, Downey, CA 90242, USA
样本信息
编号:
OESV17097523
采样时间:
2022-02-23
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020