系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV17801156
发布时间:
2022-07-22
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/USA/OR-OHSU-18225/2022
毒株别名:
-
病毒说明:
hCoV-19/USA/OR-OHSU-18225/2022
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29684
有效碱基数量:
29684
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
-
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_13996612
提交者:
Brendan L. O'Connell, Sonia Acharya, Cierra LaBlanc, Destine Krenik, Ruth V. Nichols, Alec J. Hirsch, Rabeka Ali, Donna Hansel, Guang Fan, Xuan Qin, Daniel N. Streblow, William B. Messer, Andrew C. Adey, Benjamin N. Bimber, Brian J. O’Roak
提交者单位:
Oregon SARS-CoV-2 Genome Sequencing Center
样本信息
编号:
OESV17801156
采样时间:
2022-01-24
采样地点:
North America / USA / Oregon / Clackamas County
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
-
采样单位:
OHSU Lab Services Molecular Microbiology Lab
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020