系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV17857174
发布时间:
2022-07-25
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Hamster/India/MH-MCL-22-H-5042_RNA-10864_Ham-85/2022
毒株别名:
-
病毒说明:
hCoV-19/Hamster/India/MH-MCL-22-H-5042_RNA-10864_Ham-85/2022
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29767
有效碱基数量:
29675
有效碱基百分比:
99.69%
宿主:
Mesocricetus auratus
宿主补充信息:
-
分离来源:
-
测序技术:
-
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_14035969
提交者:
Pragya D. Yadav
提交者单位:
Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex
样本信息
编号:
OESV17857174
采样时间:
2022-06-04
采样地点:
Asia / India / Maharashtra / Mumbai
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
27
采样单位:
Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020