系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV21044768
发布时间:
2023-03-29
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/deer/USA/CA-NVSL-23-003814-002/2021
毒株别名:
-
病毒说明:
hCoV-19/deer/USA/CA-NVSL-23-003814-002/2021
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29822
有效碱基数量:
29603
有效碱基百分比:
99.27%
宿主:
Odocoileus hemionus
宿主补充信息:
-
分离来源:
-
测序技术:
-
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_17347803
提交者:
Thanh Chinh, Emily Love, Kerrie Franzen, Mary Lea Killian, Kristina Lantz, Tod Stuber, Jessica Hicks, Cameron Norris
提交者单位:
Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA
样本信息
编号:
OESV21044768
采样时间:
2021-09-25
采样地点:
North America / USA / California
地点补充信息:
-
采样单位:
California Animal Health and Food Safety Laboratory - University of California-Davis
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020