系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV22389686
发布时间:
2024-04-18
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/white-taileddeer/USA/MN-MDH-41466/2023
毒株别名:
-
病毒说明:
hCoV-19/white-taileddeer/USA/MN-MDH-41466/2023
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29704
有效碱基数量:
27502
有效碱基百分比:
92.59%
宿主:
Odocoileus virginianus
宿主补充信息:
-
分离来源:
-
测序技术:
-
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_19058398
提交者:
Jacob Garfin, Matt Plumb, Kelly Pung, Sarah Namugenyi, Alyssa Mondelli, Bonnie Weber, Henry D Kunerth, Daniel Evans, and Xiong Wang
提交者单位:
Minnesota Department of Health, Public Health Laboratory
样本信息
编号:
OESV22389686
采样时间:
2023-11-10
采样地点:
North America / USA / Minnesota
地点补充信息:
-
采样单位:
University of Minnesota
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020