系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV2434077
发布时间:
2021-05-23
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/USA/NJ-NYGC-NJ-S6/2020
毒株别名:
-
病毒说明:
hCoV-19/USA/NJ-NYGC-NJ-S6/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29903
有效碱基数量:
29903
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NovaSeq 6000
组装方法:
KAPA Total; bwa v0.7.17; pileup consensus
覆盖度:
-
相关链接:
EPI_ISL_2229920
提交者:
Michael Zody, Andre Corvelo, Dayna M. Oschwald, Samantha Fennessey, Tom Maniatis, Liang Chen, Jose Mediavilla, Marcus Cunningham, Kaelea Composto, Kar Chow, David Perlin, Barry Kreiswirth
提交者单位:
New York Genome Center
提交者地址:
101 Avenue of the Americas, New York, NY 10013
样本信息
编号:
OESV2434077
采样时间:
2020-05-13
采样地点:
North America / USA / New Jersey
地点补充信息:
-
采样单位:
Hackensack Medical Center
采样地址:
111 Ideation Way, Nutely NJ, 07110
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020