系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV335847
发布时间:
2020-10-30
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MA-QDX-1458/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MA-QDX-1458/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29782
有效碱基数量:
29782
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina
组装方法:
bwa v. 0.7.17-r1188; iVar v. 1.2.2
覆盖度:
-
相关链接:
MW190260
提交者:
Rosenthal,S.H., Gerasimova,A., Kagan,R.M., Anderson,B., Grover,D., Livingston,K., Hua,M., Liu,Y., Shalhout,D.F., Owen,R. and Lacbawan,F.
提交者单位:
Infectious Diseases, Quest Diagnostics
提交者地址:
33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA
样本信息
编号:
OESV335847
采样时间:
2020-03-12
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020