系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV3558563
发布时间:
2021-08-23
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Canada/BC-BCCDC-122489/2021
毒株别名:
-
病毒说明:
hCoV-19/Canada/BC-BCCDC-122489/2021
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29695
有效碱基数量:
29695
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NextSeq 2000
组装方法:
freebayes 1.3.2
覆盖度:
533
相关链接:
EPI_ISL_3600779
提交者:
Prystajecky Natalie, Linda Hoang, Dan Fornika, John Tyson, Shannon Russell, Kim Macdonald, Kimia Kamelian, Ana Pacagnella, Corrinne Ng, Loretta Janz, Robert Azana, Mel Krajden
提交者单位:
BCCDC Public Health Laboratory
提交者地址:
655 W 12th Avenue, Vancouver, BC Canada V5T 2N3
样本信息
编号:
OESV3558563
采样时间:
2021-05-08
采样地点:
North America / Canada / British Columbia
地点补充信息:
-
采样单位:
British Columbia Centre For Disease Control
采样地址:
655 West 12th Avenue Vancouver BC Canada V5Z 4R4
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020