Virus Genome Toolkits

毒株信息

编号： OEAV3786809 发布时间： 2021-09-06 基因组完整性： partial

病毒类型
RNA viruses

毒株名称：

SARS-CoV-2/environment/USA/UT-CDC-1251/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 protein (ORF6) and ORF7a protein (ORF7a) genes, partial cds; and ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes

毒株别名：

-

病毒说明：

Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/environment/USA/UT-CDC-1251/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), and membrane glycoprotein (M) genes, complete cds; ORF6 protein (ORF6) and ORF7a protein (ORF7a) genes, partial cds; and ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds

物种名称：

Severe acute respiratory syndrome coronavirus 2

物种ID：

2697049

属名：

Betacoronavirus

分类谱系：

[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]

序列长度：

29861

有效碱基数量：

29579

有效碱基百分比：

99.06%

宿主：

swab (dog fur)

宿主补充信息：

-

分离来源：

-

测序技术：

Sanger dideoxy sequencing; Illumina

组装方法：

Sequencher v. 5.4.6; bcftools v. 1.9; bowtie2 v. 2.3.3.1

覆盖度：

-