系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV402087
发布时间:
2020-12-09
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/cat/Denmark/mDK-317/2020
毒株别名:
-
病毒说明:
hCoV-19/cat/Denmark/mDK-317/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29769
有效碱基数量:
29769
有效碱基百分比:
100.00%
宿主:
Felis catus
宿主补充信息:
-
分离来源:
-
测序技术:
Oxford Nanopore
组装方法:
ARTIC-ncov2019 v1.1.0
覆盖度:
-
相关链接:
EPI_ISL_683166
提交者:
Danish Covid-19 Genome Consortium
提交者单位:
Albertsen Lab, Department of Chemistry and Bioscience, Aalborg University, Denmark
提交者地址:
Fredrik Bajers Vej 7H, 9220 Aalborg Oest, Denmark
样本信息
编号:
OESV402087
采样时间:
2020-11-17
采样地点:
Europe / Denmark
地点补充信息:
-
采样单位:
Department of Virus and Microbiological Special Diagnostics, Statens Serum Institut, Copenhagen, Denmark
采样地址:
Artillerivej 5, 2300 Copenhagen S, Denmark
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020