Virus Genome Toolkits

毒株信息

编号： OEAV488608 发布时间： 2021-01-25 基因组完整性： partial

病毒类型
RNA viruses

毒株名称：

SARS-CoV-2/Felis catus/FRA/LHOOQ/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes

毒株别名：

-

病毒说明：

Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Felis catus/FRA/LHOOQ/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds

物种名称：

Severe acute respiratory syndrome coronavirus 2

物种ID：

2697049

属名：

Betacoronavirus

分类谱系：

[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]

序列长度：

29664

有效碱基数量：

27053

有效碱基百分比：

91.20%

宿主：

Felis catus

宿主补充信息：

-

分离来源：

oronasopharynx

测序技术：

Oxford Nanopore Technologies

组装方法：

bcftools mpileup v. 1.6

覆盖度：

-