系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV533825
发布时间:
2021-02-03
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHRM-6977/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHRM-6977/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29900
有效碱基数量:
29900
有效碱基百分比:
100.00%
宿主:
Mustela lutreola
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
IRMA v. v.0.9.5-BETA
覆盖度:
-
相关链接:
MW562269
提交者:
Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S.
提交者单位:
Respiratory Viruses Branch, Centers for Disease Control and Prevention
提交者地址:
1600 Clifton Rd, Atlanta, GA 30329, USA
样本信息
编号:
OESV533825
采样时间:
2020-10-14
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020