系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV5440932
发布时间:
2021-12-20
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Rodent/CHN/BMA8/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Rodent/CHN/BMA8/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29903
有效碱基数量:
29903
有效碱基百分比:
100.00%
宿主:
Rodentia
宿主补充信息:
-
分离来源:
lung
测序技术:
Illumina
组装方法:
BWA v. 0.1.18
覆盖度:
-
相关链接:
OL913103
提交者:
Yan,F., Li,E. and Wang,T.
提交者单位:
Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences
提交者地址:
Liuying West Road No. 666, Changchun, Jilin 130122, China
样本信息
编号:
OESV5440932
采样时间:
2020-08-31
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020