系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV556006
发布时间:
2021-01-08
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Indonesia/BT-MRINUPH-200620-312/2020
毒株别名:
-
病毒说明:
hCoV-19/Indonesia/BT-MRINUPH-200620-312/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
3822
有效碱基数量:
3822
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasopharyngeal swab
测序技术:
Sanger
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_779393
提交者:
Aksar C Lages, David Rustandi, Ivet M Suriapranata, Rinaldy Kusuma, Febi Andriani, Tri Shinta Kurniasih, Riska N Taufik, Young O Larasati, Rury M Wahyuni, Irawan Yusuf
提交者单位:
Mochtar Riady Institute for Nanotechnology-Universitas Pelita Harapan
提交者地址:
Jl. Boulevard Jendral Sudirman No.1688 Lippo Karawaci 15811 , Tangerang
样本信息
编号:
OESV556006
采样时间:
2020-06-17
采样地点:
Asia / Indonesia / Banten / Tangerang
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
59
采样单位:
Siloam Hospital Lippo Village
采样地址:
Jl. Siloam No.6, Bencongan, Kec. Klp. Dua, Tangerang, Banten 15811
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020