系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV561772
发布时间:
2021-02-05
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/GHA/WACCBIP_nCoV_GS152/2021
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/GHA/WACCBIP_nCoV_GS152/2021, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29783
有效碱基数量:
29761
有效碱基百分比:
99.93%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
MinION
组装方法:
artic v. 1.1.3
覆盖度:
-
相关链接:
MW571147
提交者:
Morang'a,C.M., Ngoi,J.M., Quansah,E.B., Saiid,S., Amuzu,D.S., Asante,I., Bonney,J.H., Bonney,E., Odoom,J.K., Ndam,N.T., Tei-Maya,F., Adusei-Poku,M., Ofori-Boadu,L., Ampofo,W.K., Amenga-Etego,L.N., Quashie,P., Bediako,Y. and Awandare,G.A.
提交者单位:
Department of Biochemistry, Cell and Molecular Biology, WACCBIP, University of Ghana
提交者地址:
Volta Road, University of Ghana, Legon, Accra, Greater Accra +233, Ghana
样本信息
编号:
OESV561772
采样时间:
2021-01-13
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020