毒株信息
编号： OEAV6116994 发布时间： 2022-02-02 基因组完整性： partial
病毒类型
RNA viruses
毒株名称：
SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-C-H12/2022 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名：
-
病毒说明：
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Hamster/HKG/HKPU-HKU-HD-Cage-C-H12/2022 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称：
Severe acute respiratory syndrome coronavirus 2
物种ID：
2697049
属名：
Betacoronavirus
分类谱系：
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度：
29769
有效碱基数量：
28659
有效碱基百分比：
96.27%
宿主：
Cricetinae
宿主补充信息：
-
分离来源：
oronasopharynx
测序技术：
Nanopore
组装方法：
ARTIC-nCoV-bioinformaticsSOP v. v1.1.0
覆盖度：
-
相关链接：
OM475744
提交者：
Kok,K.-H., Wong,S.-C., Chan,W.-M., Lei,W., Chu,A.W.-H., Ip,J.D., Lee,L.-K., Wong,I.T.-F., Lo,H.W.-H., Wong,E.Y.-K., Lao,H.-Y., Leung,J.S.-L., Cheng,V.C.-C., Ho,A.Y.-M., Lam,B.H.-S., Tse,H., Lung,D., Ng,K.H.-L., Au,A.K.-W., Siu,G.K.-H. and Yuen,K.-Y.
提交者单位：
Department of Health Technology and Informatics, The Hong Kong Polytechnic University
提交者地址：
11 Yuk Choi Rd, Hong Kong 000000, Hong Kong
样本信息
编号： OESV6116994 采样时间： 2022-01-19
病毒注释