系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV653832
发布时间:
2021-01-29
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Canada/QC-JUS-V5262953/2020
毒株别名:
-
病毒说明:
hCoV-19/Canada/QC-JUS-V5262953/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
29782
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NexteraFlex
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_890723
提交者:
Sandrine Moreira, Ioannis Ragoussis, Guillaume Bourque, Jesse Shapiro, Mark Lathrop and Michel Roger on behalf of the CoVSeQ research group (http://covseq.ca/researchgroup)
提交者单位:
Laboratoire de santé publique du Québec
提交者地址:
20045, chemin Sainte-Marie, Sainte-Anne-de-Bellevue, QC, Canada
样本信息
编号:
OESV653832
采样时间:
2020-03-25
采样地点:
North America / Canada / Quebec
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
51
采样单位:
Laboratoire de santé publique du Québec
采样地址:
20045, chemin Sainte-Marie, Sainte-Anne-de-Bellevue, QC, Canada
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020