系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV955879
发布时间:
2021-03-01
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/bat/Yunnan/PrC31/2018
毒株别名:
-
病毒说明:
hCoV-19/bat/Yunnan/PrC31/2018
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29749
有效碱基数量:
29743
有效碱基百分比:
99.98%
宿主:
Rhinolophus bat
宿主补充信息:
-
分离来源:
Feces
测序技术:
Illumina nova6000 and sanger sequencing
组装方法:
Geneious 10.2.4
覆盖度:
-
相关链接:
EPI_ISL_1098866
提交者:
Lili Li
提交者单位:
Diarrhea department, National Institute for Viral Disease Control and Prevention, China CDC
提交者地址:
100 Ying-Xin St., Xi-Cheng District, Beijing 100052, China
样本信息
编号:
OESV955879
采样时间:
2021-01-30
采样地点:
Asia / China / Yunnan / Puer City
地点补充信息:
Cave
采样单位:
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China;
采样地址:
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China;
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020