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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV436877 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/feline/HKG/20-04236/2020 MT628700 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-03-30 Feliformia 29830 2021-01-01 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barrs,V.R., Peiris,M., Tam,K.W.S., Law,P.Y.L., Brackman,C.J., To,E.M.W., Yu,V.Y.T., Chu,D.K.W., Perera,R.A.P.M. and Sit,T.H.C. School of Public Health, The University of Hong Kong 29830 100.00
OEAV436878 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/HKG/case533_VM20005127/2020 MT628701 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-03-24 Homo sapiens 29830 2021-01-01 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barrs,V.R., Peiris,M., Tam,K.W.S., Law,P.Y.L., Brackman,C.J., To,E.M.W., Yu,V.Y.T., Chu,D.K.W., Perera,R.A.P.M. and Sit,T.H.C. School of Public Health, The University of Hong Kong 29830 100.00
OEAV424064 SARS-CoV-2/human/HKG/102_2802/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232711 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-28 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29225 98.13
OEAV424065 SARS-CoV-2/human/HKG/12_2201/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232665 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-30 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28363 95.24
OEAV424066 SARS-CoV-2/human/HKG/17_2201/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232666 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-03 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29358 98.58
OEAV424067 SARS-CoV-2/human/HKG/20_3001/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232668 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-05 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29225 98.13
OEAV424068 SARS-CoV-2/human/HKG/23_2601/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232669 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-05 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28978 97.30
OEAV424069 SARS-CoV-2/human/HKG/27_3001/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232670 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-08 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28764 96.58
OEAV424070 SARS-CoV-2/human/HKG/2_1801/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232663 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-23 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28903 97.05
OEAV424071 SARS-CoV-2/human/HKG/31_2801/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232674 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-08 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28755 96.55
OEAV424072 SARS-CoV-2/human/HKG/33_0202/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232676 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-09 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28957 97.23
OEAV424073 SARS-CoV-2/human/HKG/35_0402/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232678 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-09 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29007 97.40
OEAV424074 SARS-CoV-2/human/HKG/38_3001/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232680 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-09 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28764 96.58
OEAV424075 SARS-CoV-2/human/HKG/43_0202/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232685 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-10 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28757 96.56
OEAV424076 SARS-CoV-2/human/HKG/49_3001/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232689 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-11 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29131 97.81
OEAV424077 SARS-CoV-2/human/HKG/53_0802/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232691 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-13 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29511 99.09
OEAV424078 SARS-CoV-2/human/HKG/61_0202/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232695 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-17 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29496 99.04
OEAV424079 SARS-CoV-2/human/HKG/65_1202/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232698 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-19 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29413 98.76
OEAV424080 SARS-CoV-2/human/HKG/66_2501/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232699 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-20 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 29403 98.73
OEAV424081 SARS-CoV-2/human/HKG/70_1302/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MT232700 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-22 Homo sapiens 29782 2020-12-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H. Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong 550X for Nanopore; 132X for MiSeq 28995 97.36
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