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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV298850 hCoV-19/Hong Kong/HKSH0049/2020 EPI_ISL_578701 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-10-05 Homo sapiens 29782 2020-10-14 Deep throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Molecular Pathology Division, Department of Pathology, Hong Kong Sanatorium & Hospital 2 Village Road, Happy Valley, Hong Kong (SAR) Chun Hang AU, Wai Sing CHAN, Ho Yin LAM, Dona N. HO, Simon Y.M. LAM, Jonpaul S.T. ZEE, Tsun Leung CHAN, Edmond S.K. MA Molecular Pathology Division, Department of Pathology, Hong Kong Sanatorium & Hospital 28978 97.30
OEAV298851 hCoV-19/Hong Kong/HKSH0050/2020 EPI_ISL_578702 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-10-05 Homo sapiens 29782 2020-10-14 Deep throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Molecular Pathology Division, Department of Pathology, Hong Kong Sanatorium & Hospital 2 Village Road, Happy Valley, Hong Kong (SAR) Chun Hang AU, Wai Sing CHAN, Ho Yin LAM, Dona N. HO, Simon Y.M. LAM, Jonpaul S.T. ZEE, Tsun Leung CHAN, Edmond S.K. MA Molecular Pathology Division, Department of Pathology, Hong Kong Sanatorium & Hospital 28470 95.59
OEAV292973 hCoV-19/Beijing/NPRC0004/2020 EPI_ISL_575330 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-04-15 Homo sapiens 29849 2020-10-08 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Institute for Viral Disease Control and Prevention, China CDC 155 Changbai Road, Changping District, Beijing China Rongbao Gao, Kang Xiao, Qinqin Song, ZhiQiang Xia, Dong Xia, Juan Song, Haijun Du, Yuan He, Shuai Pang, Xuancheng Lu, Guizhen Wu, Geogia Fu Gao, Jun Han National Institute for Viral Disease Control and Prevention, China CDC 29849 100.00
OEAV293024 hCoV-19/Gansu/NPRC0003/2020 EPI_ISL_575329 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-02-24 Homo sapiens 29852 2020-10-08 Sputum 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Institute for Viral Disease Control and Prevention, China CDC 155 Changbai Road, Changping District,Beijing China Rongbao Gao, Kang Xiao, Qinqin Song, ZhiQiang Xia, Dong Xia, Juan Song, Haijun Du, Yuan He, Shuai Pang, Xuancheng Lu, Guizhen Wu, Geogia Fu Gao, Jun Han National Institute for Viral Disease Control and Prevention, China CDC 29852 100.00
OEAV272425 hCoV-19/Hong Kong/VB20175856/2020 EPI_ISL_539823 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Communicable Disease Branch 3/F, 147C Argyle Street, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272426 hCoV-19/Hong Kong/VB20175873/2020 EPI_ISL_539822 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-08-14 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Communicable Disease Branch 3/F, 147C Argyle Street, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272427 hCoV-19/Hong Kong/VM20005737/2020 EPI_ISL_539850 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-25 Homo sapiens 29807 2020-09-21 Nasopharyngeal swab, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Pok Oi Hospital Au Tau, Yuen Long, New Territories, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29807 100.00
OEAV272428 hCoV-19/Hong Kong/VM20006777/2020 EPI_ISL_539820 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-29 Homo sapiens 29782 2020-09-21 NPA, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Queen Mary Hospital 102 Pok Fu Lam Road, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272429 hCoV-19/Hong Kong/VM20008964/2020 EPI_ISL_539851 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-04-03 Homo sapiens 29831 2020-09-21 Nasopharyngeal swab, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Pok Oi Hospital Au Tau, Yuen Long, New Territories, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29831 100.00
OEAV272430 hCoV-19/Hong Kong/VM20030365/2020 EPI_ISL_539804 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-05 Homo sapiens 29782 2020-09-21 Sputum 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Yan Chai Hospital 7-11, Yan Chai St, Tsuen Wan, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272431 hCoV-19/Hong Kong/VM20030491/2020 EPI_ISL_539805 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-06 Homo sapiens 29782 2020-09-21 NPA, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Kwong Wah Hospital 25 Waterloo Road, Yaumatei, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272432 hCoV-19/Hong Kong/VM20030723/2020 EPI_ISL_539807 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-06 Homo sapiens 29782 2020-09-21 NPS, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Princess Margaret Hospital 2-10 Princess Margaret Hospital Road, Kwai Chung, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29780 99.99
OEAV272433 hCoV-19/Hong Kong/VM20031161/2020 EPI_ISL_539806 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-05 Homo sapiens 29782 2020-09-21 Nasopharyngeal aspirate 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Princess Margaret Hospital 2-10 Princess Margaret Hospital Road, Kwai Chung, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29519 99.12
OEAV272434 hCoV-19/Hong Kong/VM20031162/2020 EPI_ISL_539808 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-06 Homo sapiens 29782 2020-09-21 Nasopharyngeal aspirate 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Princess Margaret Hospital 2-10 Princess Margaret Hospital Road, Kwai Chung, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272435 hCoV-19/Hong Kong/VM20040795/2020 EPI_ISL_539809 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-14 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Asiaworld Expo Command Post AsiaWorld-Expo Hong Kong International Airport Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272436 hCoV-19/Hong Kong/VM20059282/2020 EPI_ISL_539810 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-18 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Asiaworld Expo Command Post AsiaWorld-Expo Hong Kong International Airport Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272437 hCoV-19/Hong Kong/VM20060346/2020 EPI_ISL_539812 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-19 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Asiaworld Expo Command Post AsiaWorld-Expo Hong Kong International Airport Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272438 hCoV-19/Hong Kong/VM20060398/2020 EPI_ISL_539811 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-19 Homo sapiens 29782 2020-09-21 Throat saliva 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Asiaworld Expo Command Post AsiaWorld-Expo Hong Kong International Airport Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
OEAV272439 hCoV-19/Hong Kong/VM20061555/2020 EPI_ISL_539803 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-20 Homo sapiens 29782 2020-09-21 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Queen Mary Hospital 102 Pok Fu Lam Road, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29781 100.00
OEAV272440 hCoV-19/Hong Kong/VM20063264/2020 EPI_ISL_539813 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-07-20 Homo sapiens 29782 2020-09-21 NPA, Throat swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Prince of Wales Hospital 30-32 Ngan Shing Street, Sha Tin, Hong Kong (SAR) Alan K.L. Tsang, Peter C.W. Yip, Edman T.K. Lam, Rickjason C.W. Chan, Dominic N.C. Tsang Hong Kong Department of Health 29782 100.00
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