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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV2129867 SARS-CoV-2/human/HKG/HKPU-00179/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298845 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-08 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29305 98.46
OEAV2129868 SARS-CoV-2/human/HKG/HKPU-00180/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298844 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-17 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29546 99.27
OEAV2129869 SARS-CoV-2/human/HKG/HKPU-00181/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; and envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298842 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-30 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29056 97.62
OEAV2129870 SARS-CoV-2/human/HKG/HKPU-00183/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; and envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298839 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-05-05 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29513 99.16
OEAV2129871 SARS-CoV-2/human/HKG/HKPU-00184/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; and envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298840 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-05-05 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29511 99.15
OEAV2129872 SARS-CoV-2/human/HKG/HKPU-00185/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; and envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298841 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-05-05 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29233 98.22
OEAV2129873 SARS-CoV-2/human/HKG/HKPU-00186/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; and envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ298846 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-05-07 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 28979 97.36
OEAV2178220 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/HKG/HKPU-00182/2021 MZ298843 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-30 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29762 99.99
OEAV2178221 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/HKG/HKPU-00187/2021 MZ298847 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-05-12 Homo sapiens 29764 2021-05-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cheng,V.C.-C., Siu,G.K.-H., Wong,S.-C., Chen,H., Lee,L.-K., Leung,J.S.-L., Lu,K.K., Chan,C.T.-M., Lo,H.W.-H., Leung,K.S.-S., Wong,E.Y.-K., Luk,S., Ng,T.T.-L., Jim,H.-C., Lao,H.-Y., Wong,D.S.-H., Tam,K.K.-G., Mok,K.K.-S., Wong,K.N., Yeh,E.Y.-W., Lam,B.P.-H., Lam,J.Y.-W., Wu,A.K.-L., Yau,M.C.-Y., Lai,Y.W.-M., Ho,A.Y.-M., Leung,W.-S., Chan,M.-C., Lam,B.H.-S., To,W.-K., Lee,R.A., Lung,D.C., Tse,H., To,K.K.-W. and Yuen,K.-Y. Department of Health Technology and Informatics, The Hong Kong Polytechnic University 29764 100.00
OEAV2178417 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-51/2020 MZ277384 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-11-25 Homo sapiens 29895 2021-05-25 saliva, oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29895 100.00
OEAV2178418 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-52/2021 MZ277385 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-03 Homo sapiens 29895 2021-05-25 saliva, oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29894 100.00
OEAV2178419 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-53/2021 MZ277386 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-28 Homo sapiens 29877 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29877 100.00
OEAV2178420 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-54/2021 MZ277387 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-28 Homo sapiens 29879 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29879 100.00
OEAV2178421 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-55/2021 MZ277388 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-28 Homo sapiens 29880 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29880 100.00
OEAV2178422 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-56/2021 MZ277389 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-28 Homo sapiens 29885 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29885 100.00
OEAV2178423 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-57/2021 MZ277390 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-01-31 Homo sapiens 29891 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29891 100.00
OEAV2178424 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-58/2021 MZ277391 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-03-01 Homo sapiens 29873 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29873 100.00
OEAV2178425 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-59/2021 MZ277392 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-03-30 Homo sapiens 29880 2021-05-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29880 100.00
OEAV2178426 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-60/2021 MZ277393 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-04 Homo sapiens 29877 2021-05-25 saliva, oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29877 100.00
OEAV2178427 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-61/2021 MZ277394 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2021-04-04 Homo sapiens 29876 2021-05-25 saliva, oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R. Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital 29876 100.00
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