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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV464542 SARS-CoV-2/human/USA/CA-CDC-STM-021/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485369 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29835 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29550 99.04
OEAV464543 SARS-CoV-2/human/USA/CA-CDC-STM-022/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485340 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29850 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29838 99.96
OEAV464544 SARS-CoV-2/human/USA/CA-CDC-STM-037/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485365 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29815 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29806 99.97
OEAV464545 SARS-CoV-2/human/USA/CA-CDC-STM-038/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485364 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29848 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29701 99.51
OEAV464546 SARS-CoV-2/human/USA/CA-CDC-STM-050/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485363 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29867 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29857 99.97
OEAV464547 SARS-CoV-2/human/USA/CA-CDC-STM-061/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485373 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-27 Homo sapiens 29836 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29826 99.97
OEAV464548 SARS-CoV-2/human/USA/CA-CDC-STM-064/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485391 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29836 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29774 99.79
OEAV464549 SARS-CoV-2/human/USA/CA-CDC-STM-067/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485390 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29859 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29835 99.92
OEAV464550 SARS-CoV-2/human/USA/CA-CDC-STM-069/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485388 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29836 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29820 99.95
OEAV464551 SARS-CoV-2/human/USA/CA-CDC-STM-070/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485387 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29861 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29850 99.96
OEAV464552 SARS-CoV-2/human/USA/CA-CDC-STM-073/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485385 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29863 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29852 99.96
OEAV464553 SARS-CoV-2/human/USA/CA-CDC-STM-076/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485339 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29858 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29847 99.96
OEAV464554 SARS-CoV-2/human/USA/CA-CDC-STM-077/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485338 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29862 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29849 99.96
OEAV464555 SARS-CoV-2/human/USA/CA-CDC-STM-078/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485337 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29861 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29849 99.96
OEAV464556 SARS-CoV-2/human/USA/CA-CDC-STM-080/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485336 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29862 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29851 99.96
OEAV464557 SARS-CoV-2/human/USA/CA-CDC-STM-082/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485335 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29855 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29844 99.96
OEAV464558 SARS-CoV-2/human/USA/CA-CDC-STM-087/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485334 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29862 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29851 99.96
OEAV464559 SARS-CoV-2/human/USA/CA-CDC-STM-105/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485326 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29836 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29819 99.94
OEAV464560 SARS-CoV-2/human/USA/CA-CDC-STM-126/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485302 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-30 Homo sapiens 29850 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29838 99.96
OEAV464561 SARS-CoV-2/human/USA/CA-CDC-STM-127/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene MW485301 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-30 Homo sapiens 29854 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29839 99.95
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