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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV11588042 hCoV-19/tiger/USA/IL-21-40753/2021 EPI_ISL_8689511 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-24 Panthera tigris tigris 4939 2022-01-13 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Illinois Veterinary Diagnostic Laboratory Leyi Wang University of Illinois Veterinary Diagnostic Laboratory 4939 100.00
OEAV12052225 hCoV-19/lion/USA/IN-21-039574-001/2021 EPI_ISL_9046670 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-18 Panthera leo 29827 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29827 100.00
OEAV12052226 hCoV-19/lion/USA/LA-22-000856-007/2021 EPI_ISL_9046672 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-30 Panthera leo 29804 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Louisiana Animal Disease Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29804 100.00
OEAV12052227 hCoV-19/lion/USA/LA-22-000856-008/2021 EPI_ISL_9046673 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-12-30 Panthera leo 29791 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Louisiana Animal Disease Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29791 100.00
OEAV12052228 hCoV-19/lion/USA/UT-21-033479-005/2021 EPI_ISL_9046671 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-03 Panthera leo 29812 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29812 100.00
OEAV13540128 hCoV-19/lion/USA/TX-22-002383-002/2022 EPI_ISL_10656100 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-01-14 Panthera leo 29792 2022-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Texas Veterinary Medical Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Thanh T. Chinh, Tod P. Stuber, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29792 100.00
OEAV13540254 hCoV-19/tiger/USA/FL-22-000348-001/2022 EPI_ISL_10656098 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-01-02 Panthera tigris 29827 2022-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Florida Department of Agriculture and Consumer Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Thanh T. Chinh, Tod P. Stuber, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29827 100.00
OEAV13540255 hCoV-19/tiger/USA/FL-22-000351-001/2022 EPI_ISL_10656099 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2022-01-03 Panthera tigris 29847 2022-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Florida Department of Agriculture and Consumer Services Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Thanh T. Chinh, Tod P. Stuber, Mia Torchetti, Kristina Lantz Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29847 100.00
OEAV18280930 hCoV-19/lion/Colombia/ATL-G-USB_024/2021 EPI_ISL_14505769 RNA virus Severe acute respiratory syndrome coronavirus 2 Colombia 2021-10-19 Panthera leo 29770 2022-08-17 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Fundación Botánica y Zoológica de Barranquilla Yesit Bello-Lemus, Henrique G. Riva, Ibeth Luna-Rodriguez, Leonardo Arrieta-Rangel, Martha Guerra-Simanca, Juvenal Yosa-Reyes, Antonio Acosta-Hoyos Laboratorio de Virología - Universidad Simón Bolívar 28987 97.37
OEAV19074594 hCoV-19/snowleopard/USA/SD-21-030290-001/2021 EPI_ISL_15141949 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-07 Panthera uncia 29712 2022-09-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman National Veterinary Services Laboratories - USDA Diagnostic Virology Laboratory 27402 92.23
OEAV22295930 hCoV-19/tiger/England/APHA-M12-21-01/2021 EPI_ISL_18917581 RNA virus Severe acute respiratory syndrome coronavirus 2 United Kingdom 2021-12-03 Panthera tigris altaica 29854 2024-02-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Animal and Plant Health Agency (APHA) Virology Department Amanda Seekings, Rebecca Shipley, Alexander Byrne, Shweta Shukla, Megan Golding, Joan Amaya-Cuesta, Hooman Goharriz, Ana Gómez Vitores, Fabian Lean, Joe James, Alejandro Núñez, Alistair Breed, Andrew Frost, Jörg Balzer, Ian Brown, Sharon Brookes, Lorraine McElhinney. Animal and Plant Health Agency (APHA) Virology Department 29854 100.00
OEAV5646136 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014160/2021 OM181948 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29787 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29787 100.00
OEAV5646137 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014167/2021 OM181957 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29806 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29806 100.00
OEAV5646138 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014178/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM181960 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29790 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29057 97.54
OEAV5646139 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014207/2021 OM181954 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-15 Panthera leo 29784 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29784 100.00
OEAV5646140 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014211/2021 OM181949 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-15 Panthera leo 29807 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29807 100.00
OEAV5646141 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014218/2021 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; surface glycoprotein (S) gene, complete cds; ORF3a protein (ORF3a) gene, partial cds; envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM181952 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-15 Panthera leo 29790 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 25035 84.04
OEAV5646143 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014255/2021 OM181955 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29793 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29793 100.00
OEAV5646144 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014270/2021 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes OM181958 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-15 Panthera leo 29825 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 28758 96.42
OEAV5646146 SARS-CoV-2/Panthera leo/USA/CO-CDPHE-2102014287/2021 OM181950 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-10-15 Panthera leo 29785 2022-01-07 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bankers,L., Hetherington-Rauth,M.C., Ir,D., Alexandria,R., Michael,M.A., Waters,M., Smith,A., Matzinger,S.R., Totten,S. and Travanty,E.A. Department of Microbiology, CDPHE SARS-CoV-2 submissions 29785 100.00
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