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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV464702 SARS-CoV-2/human/USA/CA-UW-63893941/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485449 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-01-08 Homo sapiens 29521 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Roychoudhury,P., Xie,H., Shrestha,L., Lin,M.J., Huang,M.-L., Jerome,K.R. and Greninger,A. Laboratory Medicine, University of Washington 29521 100.00
OEAV464747 SARS-CoV-2/human/USA/OR-UW-63893956/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485448 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-01-08 Homo sapiens 29521 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Roychoudhury,P., Xie,H., Shrestha,L., Lin,M.J., Huang,M.-L., Jerome,K.R. and Greninger,A. Laboratory Medicine, University of Washington 29521 100.00
OEAV464755 SARS-CoV-2/human/USA/WA-UW-3899/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485427 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-03-27 Homo sapiens 29540 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Roychoudhury,P., Xie,H., Shrestha,L., Rachleff,V.M., Huang,M.-L., Jerome,K.R. and Greninger,A. Laboratory Medicine, University of Washington 29540 100.00
OEAV464757 SARS-CoV-2/human/USA/WA-UW-4580/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485419 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-03-31 Homo sapiens 29540 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Roychoudhury,P., Xie,H., Shrestha,L., Rachleff,V.M., Huang,M.-L., Jerome,K.R. and Greninger,A. Laboratory Medicine, University of Washington 29540 100.00
OEAV464759 SARS-CoV-2/human/USA/WA-UW-6722/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW485426 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-11 Homo sapiens 29540 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Roychoudhury,P., Xie,H., Shrestha,L., Rachleff,V.M., Huang,M.-L., Jerome,K.R. and Greninger,A. Laboratory Medicine, University of Washington 29540 100.00
OEAV464762 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00001-21-08/2020 MW485243 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-08-20 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464763 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00002-05-08/2020 MW485246 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-08-04 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464764 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00023-09-07/2020 MW485247 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-07-08 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464765 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00028-21-04/2020 MW485244 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-04-20 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464766 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00049-08-07/2020 MW485248 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-07-07 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464767 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00053-30-04/2020 MW485245 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-04-29 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464768 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SRB/SA00170-16-07/2020 MW485249 RNA viruses Severe acute respiratory syndrome coronavirus 2 Serbia 2020-07-15 Homo sapiens 29782 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Vidanovic,D., Tesovic,B., Knezevic,A., Jovanovic,T., Jankovic,M., Sekler,M., Banovic Djeri,B., Volkening,J., Afonso,C., Petrovic,T. and Mrkovacki,S. Laboratory Diagnostic, Veterinary Specialized Institute Kraljevo 29782 100.00
OEAV464769 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/AL-CDC-STM-034/2020 MW485377 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-27 Homo sapiens 29876 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29874 99.99
OEAV464771 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/AZ-CDC-STM-140/2020 MW485341 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29847 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29847 100.00
OEAV464773 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-036/2020 MW485366 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-28 Homo sapiens 29874 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29872 99.99
OEAV464777 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-068/2020 MW485389 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-26 Homo sapiens 29851 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29849 99.99
OEAV464779 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-096/2020 MW485331 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29881 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29879 99.99
OEAV464780 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-097/2020 MW485330 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-29 Homo sapiens 29849 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29847 99.99
OEAV464784 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-118/2020 MW485304 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-30 Homo sapiens 29876 2021-01-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29874 99.99
OEAV465154 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-LACPHL-AF00124/2020 MW485136 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-12-17 Homo sapiens 29851 2021-01-16 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Hemarajata,P. and Green,N. Los Angeles County Public Health Laboratories, Los Angeles County Public Health Lab microbial pathogen submission group 29851 100.00
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