Gordonibacter pamelaeae Wurdemann et al. 2009
General information
Name
Gordonibacter pamelaeae
Valid publication
2009
Nomenclature type
7-10-1-b;CCUG 55131
;DSM 19378
;JCM 16334
Etymology
N.L. fem. gen. n. <i>pamelaeae</i>, of Pamela, named after Dr Pamela Lee Oxley (née Fredericks), biochemist, environmentalist, teacher and mentor.
Ecology
Source
isolated from the sigmoid region of the colon of a patient with active Crohn's disease (male, age 33).
Morphology
Cells are motile, non-spore-forming coccobacilli (0.5-0.6 × 0.8-1.2 µm). Cells display a conical cell apex. Growth is generally slow on BHI and Schaedler anaerobic media (Oxoid) supplemented with 5% defibrinated horse blood, with pale-white, semi-translucent colonies forming after 48-72 h of incubation at 37°C in an anaerobic environment. Subpolarly inserted flagella are apparent when cells are grown in BHI medium.
Morphology standardized
length | width |
---|---|
0.8-1.2 | 0.5-0.6 |
motility |
---|
- |
flagellum | arrangement |
---|---|
+ | subpolar |
Physiology
Oxygen requirement
anaerobic
GC
GC_content |
---|
66.4 |
Gram
staining |
---|
positive |
C/N source
positive results | ||||||
---|---|---|---|---|---|---|
arginine | L-methionine | L-phenylalanine | L-valine | dextrin | D-glucose | L-aspartate |
negative results | |||||
---|---|---|---|---|---|
raffinose | glucose | xylose | trehalose | mannose | arabinose |
Biochemistry
Fattyacids
Name | Account |
---|---|
iso-C14:0 | 6.78 |
iso-C15:0 DMA | 6.07 |
anteiso-C15:0 | 19.79 |
C16:0 DMA | 13.47 |
C14:0 DMA | 9.72 |
C14:0 | 8.71 |
Nitrate rdc
-
Polar lipids
PG;DPG
Quinones
MK-6;MMK-6;DMMK-6
Enzymology
Enzyme | Activity |
---|---|
catalase | + |
Taxonomy marker
AM886059
Gordonibacter pamelaeae 7-10-1-b
Create date: 18-SEP-2008
Length
1431
Topology
linear
Strandedness
double
Xref
Genomics
Submitter date: 2010/04/23 00:00 Update date: 2013/04/16 00:00
Source
MetaHIT
Coverage
0
Assembly status
Chromosome
Assembly class
haploid
Strain List
References
1
Wurdemann, D., Tindall, B.J., Pukall, R., Lunsdorf, H., Strompl, C., Namuth, T., Nahrstedt, H., Wos-Oxley, M., Ott, S., Schreiber, S., Timmis K.N., and Oxley, A.P.A. Gordonibacter pamelaeae gen. nov., sp. nov., a new member of the Coriobacteriaceae isolated from a patient with Crohn's disease, and reclassification of Eggerthella hongkongensis Lau et al. 2006 as Paraeggerthella hongkongensis gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. (2009) 59:1405-1415.[DOI:10.1099/ijs.0.005900-0]
[PMID:19502325]
2
Jin, J.-S., Lee, K.C., Park, I.-S., Kim, K.K., Ahn, J.S., Benno, Y., Hattori, M., and Lee, J.-S. Gordonibacter faecihominis sp. nov., isolated from human faeces. Antonie van Leeuwenhoek (2014) 106:439-447.[DOI:10.1007/s10482-014-0212-6]
[PMID:24948086]
3
Notification of changes in taxonomic opinion previously published outside the IJSEM. Int. J. Syst. Evol. Microbiol. (2015) 65:7-10.[DOI:10.1099/ijs.0.000007-0]