Instruction

To speed up the identification of pathogens, we developed the automated Identification Platform for Pathogens (IPP), which takes the metatranscriptomic data measured by next-generation sequencing as input and first filters out the low-quality sequencing data by quality control of the sequence data. Next, we used FastViromeExplorer to compare the remaining sequences with the known pathogenic reference databases to identify possible pathogen species in the samples; and finally, we assembled the genome of the pathogens in the samples based on the reference genomes of the identified pathogens.

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