Analysis typeOther
OEZ014593
Analysis typeOther
OEZ014592
Analysis typeDe Novo Assembly
OEZ014112
DescriptionRaw sequencing reads containing rRNA were filtered by mapping the sequencing reads to the rRNA database using Bowtie2 (version 2.3.4.1). The paired-end reads were further filtered by SOAPnuke (version 2.1.0). Bowtie2 was also used to map RNA reads to UCSC human transcriptome GRCh38. The expression levels of all genes and isoforms were estimated by RSEM (version 1.3.1) with default parameters.
Analysis typeOther
OEZ014526
DescriptionMuSE(v1.0), Strelka2(v2.9.9), MutTect2, SomaticSniper(v.1.0.5.0), and Lancet(v.1.0.7) were used to detect somatic SNVs while somatic indels were detected by Strelka2(v2.9.9), MutTect2, Lancet(v.1.0.7), and SvABA(v.0.2.1). Both SNVs and somatic indels, called by at least two kinds of software were retained.
Analysis typeOther
OEZ013906
DescriptionData were aligned to the human genome (hg38), and gene counts were quantified using the default parameters of DNBelab C4 scRNA-seq (version v3.0, BGI). After the DNBelab C4 scRNA-seq pipeline, the raw expression matrices were used as an input for the SoupX algorithm to remove ambient RNA contamination, according to the tutorial (version 1.6.1). The SoupX-correction matrices were then further processed using the Seurat R package (version 4.2.0). Chord R package(version 2.0.11) were used to exclude doublets from each sample.
Analysis typeOther
OEZ013915
Analysis typeOther
OEZ014587
Descriptionneuron raw network
Analysis typeDe Novo Assembly
OEZ014584
Descriptiondown-stream analysis of gene expression matrix generated by cellranger or celescope.
Analysis typeReference Alignment
OEZ014581
Analysis typeDe Novo Assembly
OEZ014370