General Information
- Experiment ID
- OEX021098
- Experiment Name
- Metagenomic
- Experiment Type
- Metagenomic
- Description
- Cultivation of methyl-reducing methanogen outside of Euryarchaeota
- Protocol
- Genomic DNA from enrichments incubating with different substrates and temperature was extracted using the bead-beating DNA extracted method as previously described. Library sequencing was sent to Novogene using a NovaSeq 6000 platform with PE150, generating raw metagenomic sequencing data.
Experiment information
- Attributes
-
library_layout Paired mate_pair n/a insertion_size n/a number_of_reads_sequenced n/a library_name n/a library_selection RANDOM library_strategy WGS platform Illumina NovaSeq 6000 - Project
-
1
Project ID Project name Create Date OEP003742 Verstraetearchaea LWZ-6 2022-11-10 - Samples
-
21
Sample ID Sample Name Organism Tissue Create Date OES289589 AM_stage3 oil metagenome N/A 2022-11-23 OES289590 XY_C20_T55_P3 oil metagenome N/A 2022-11-23 OES289591 SK_C16_T55_P0 oil metagenome N/A 2022-11-23 OES289592 SK_C16_T55_P1 oil metagenome N/A 2022-11-23 OES289593 SK_C16_T55_P2 oil metagenome N/A 2022-11-23 OES289594 SK_C16_T55_P3 oil metagenome N/A 2022-11-23 OES293718 GD_Cm_T35_P0 oil metagenome N/A 2023-01-12 OES289602 XY_C20_T55_P1_bin.108 oil metagenome N/A 2022-11-23 OES289603 XY_C20_T55_P1_bin.49 oil metagenome N/A 2022-11-23 OES289604 XY_C20_T55_P2_bin.121 oil metagenome N/A 2022-11-23 OES289605 XY_C20_T55_P2_bin.18 oil metagenome N/A 2022-11-23 OES289606 XY_C20_T55_P2_bin.56 oil metagenome N/A 2022-11-23 OES289607 XY_C16_T55_B1_bin.3 oil metagenome N/A 2022-11-23 OES289608 XY_C16_T55_CK_bin.13 oil metagenome N/A 2022-11-23 OES289611 GD_Cm_T35_P1_bin.81 oil metagenome N/A 2022-11-23 OES289612 GD_Cm_T35_P2_bin.12 oil metagenome N/A 2022-11-23 OES289613 GD_Cm_T35_P3_bin.24 oil metagenome N/A 2022-11-23 OES289617 HX_O_T65_bin.2 oil metagenome N/A 2022-11-23 OES289618 HX_Cm_T55_B3_bin.47 oil metagenome N/A 2022-11-23 OES289619 XY_O_T55_M2_bin.40 oil metagenome N/A 2022-11-23 OES289624 XY_O_T55_M1_bin.33 oil metagenome N/A 2022-11-23 - Runs
-
33
Run ID Run Name Sample Data Num Create Date OER376476 AM_stage3 AM_stage3 3 2022-12-08 OER376477 XY_C20_T55_P3 XY_C20_T55_P3 2 2022-12-08 OER376478 SK_C16_T55_P0 SK_C16_T55_P0 2 2022-12-08 OER376479 SK_C16_T55_P1 SK_C16_T55_P1 2 2022-12-08 OER376480 SK_C16_T55_P2 SK_C16_T55_P2 2 2022-12-08 OER376481 SK_C16_T55_P3 SK_C16_T55_P3 2 2022-12-08 OER377342 GD_Cm_T35_P0 GD_Cm_T35_P0 2 2023-01-12 OER377784 LWZ-6 AM_stage3 1 2023-01-19 OER377785 16S_rRNA_LWZ-6 AM_stage3 1 2023-01-19 OER377786 16S_rRNA_Acetomicrobium_sp._strain_CY-2 AM_stage3 1 2023-01-19 OER377787 XY_C20_T55_P1_bin.108 XY_C20_T55_P1_bin.108 1 2023-01-19 OER377788 XY_C20_T55_P1_bin.49 XY_C20_T55_P1_bin.49 1 2023-01-19 OER377789 XY_C20_T55_P2_bin.121 XY_C20_T55_P2_bin.121 1 2023-01-19 OER377790 XY_C20_T55_P2_bin.18 XY_C20_T55_P2_bin.18 1 2023-01-19 OER377791 XY_C20_T55_P2_bin.56 XY_C20_T55_P2_bin.56 1 2023-01-19 OER377792 XY_C16_T55_B1_bin.3 XY_C16_T55_B1_bin.3 1 2023-01-19 OER377793 XY_C16_T55_CK_bin.13 XY_C16_T55_CK_bin.13 1 2023-01-19 OER377794 XY_C20_T55_P3_bin.45 XY_C20_T55_P3 1 2023-01-19 OER377795 GD_Cm_T35_P1_bin.81 GD_Cm_T35_P1_bin.81 1 2023-01-19 OER377796 GD_Cm_T35_P2_bin.12 GD_Cm_T35_P2_bin.12 1 2023-01-19 OER377797 GD_Cm_T35_P3_bin.24 GD_Cm_T35_P3_bin.24 1 2023-01-19 OER377798 GD_Cm_T35_P0_bin.15 GD_Cm_T35_P0 1 2023-01-19 OER377799 GD_Cm_T35_P0_bin.43 GD_Cm_T35_P0 1 2023-01-19 OER377800 GD_Cm_T35_P0_bin.90 GD_Cm_T35_P0 1 2023-01-19 OER377801 HX_O_T65_bin.2 HX_O_T65_bin.2 1 2023-01-19 OER377802 HX_Cm_T55_B3_bin.47 HX_Cm_T55_B3_bin.47 1 2023-01-19 OER377803 XY_O_T55_M2_bin.40 XY_O_T55_M2_bin.40 1 2023-01-19 OER377804 SK_C16_T55_P0_bin.9 SK_C16_T55_P0 1 2023-01-19 OER377805 SK_C16_T55_P1_bin.23 SK_C16_T55_P1 1 2023-01-19 OER377806 SK_C16_T55_P2_bin.6 SK_C16_T55_P2 1 2023-01-19 OER377807 SK_C16_T55_P3_bin.44 SK_C16_T55_P3 1 2023-01-19 OER377808 XY_O_T55_M1_bin.33 XY_O_T55_M1_bin.33 1 2023-01-19 OER377810 Acetomicrobium_sp._strain_CY-2 AM_stage3 1 2023-01-20
Author Information
- Create Date
- 2022-11-20
- Last Modified
- 2024-02-14
- Submission
- Kejia Wu
- Biogas Institute of Ministry of Agriculture and Rural Affairs