General Information
- Experiment ID
- OEX022963
- Experiment Name
- Effect of Lysinibacillus varians GY32 on microbial communities in river sediments
- Experiment Type
- Metagenomic
- Description
- The sediment collected from a black odorous river in the Dongbo community (Zhongtang town, Dongguan) was incubated in sediment microbial fuel cells in the laboratory. The response of microbial communities to the introduction of Lysinibacillus varians GY32 was investigated. Samples in this study are deal with PCR amplification of 16S rRNA hypervariable region V3-V4.
Experiment information
- Attributes
-
library_layout Paired mate_pair n/a insertion_size n/a number_of_reads_sequenced n/a library_name n/a library_selection PCR library_strategy AMPLICON platform Illumina HiSeq 2500 - Project
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1
Project ID Project name Create Date OEP004082 Filamentous electroactive bacterium Lysinibacillus varians GY32 promotes sulfate reduction and vertical homogenization of sediments 2023-03-27 - Samples
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77
Sample ID Sample Name Organism Tissue Create Date OES302506 Control-inoculum1 freshwater sediment metagenome N/A 2023-03-27 OES302507 Control-inoculum2 freshwater sediment metagenome N/A 2023-03-27 OES302508 Control-inoculum3 freshwater sediment metagenome N/A 2023-03-27 OES302509 Control-inoculum4 freshwater sediment metagenome N/A 2023-03-27 OES302510 Treatment-inoculum1 freshwater sediment metagenome N/A 2023-03-27 OES302511 Treatment-inoculum2 freshwater sediment metagenome N/A 2023-03-27 OES302512 Treatment-inoculum3 freshwater sediment metagenome N/A 2023-03-27 OES302513 Treatment-inoculum4 freshwater sediment metagenome N/A 2023-03-27 OES302514 Control-Day 2-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302515 Control-Day 2-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302516 Control-Day 2-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302517 Control-Day 2-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302518 Control-Day 2-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302519 Control-Day 2-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302520 Control-Day 2-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302521 Control-Day 2-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302522 Control-Day 2-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302523 Treatment-Day 2-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302524 Treatment-Day 2-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302525 Treatment-Day 2-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302526 Treatment-Day 2-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302527 Treatment-Day 2-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302528 Treatment-Day 2-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302529 Treatment-Day 2-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302530 Treatment-Day 2-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302531 Treatment-Day 2-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302532 Treatment-Day 2-4-Top freshwater sediment metagenome N/A 2023-03-27 OES302533 Treatment-Day 2-4-Middle freshwater sediment metagenome N/A 2023-03-27 OES302534 Treatment-Day 2-4-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302535 Control-Day 7-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302536 Control-Day 7-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302537 Control-Day 7-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302538 Control-Day 7-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302539 Control-Day 7-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302540 Control-Day 7-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302541 Control-Day 7-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302542 Control-Day 7-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302543 Control-Day 7-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302544 Control-Day 7-4-Top freshwater sediment metagenome N/A 2023-03-27 OES302545 Control-Day 7-4-Middle freshwater sediment metagenome N/A 2023-03-27 OES302546 Control-Day 7-4-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302547 Treatment-Day 7-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302548 Treatment-Day 7-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302549 Treatment-Day 7-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302550 Treatment-Day 7-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302551 Treatment-Day 7-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302552 Treatment-Day 7-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302553 Treatment-Day 7-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302554 Treatment-Day 7-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302555 Treatment-Day 7-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302556 Treatment-Day 7-4-Top freshwater sediment metagenome N/A 2023-03-27 OES302557 Treatment-Day 7-4-Middle freshwater sediment metagenome N/A 2023-03-27 OES302558 Treatment-Day 7-4-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302559 Control-Day 14-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302560 Control-Day 14-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302561 Control-Day 14-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302562 Control-Day 14-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302563 Control-Day 14-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302564 Control-Day 14-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302565 Control-Day 14-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302566 Control-Day 14-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302567 Control-Day 14-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302568 Control-Day 14-4-Top freshwater sediment metagenome N/A 2023-03-27 OES302569 Control-Day 14-4-Middle freshwater sediment metagenome N/A 2023-03-27 OES302570 Control-Day 14-4-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302571 Treatment-Day 14-1-Top freshwater sediment metagenome N/A 2023-03-27 OES302572 Treatment-Day 14-1-Middle freshwater sediment metagenome N/A 2023-03-27 OES302573 Treatment-Day 14-1-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302574 Treatment-Day 14-2-Top freshwater sediment metagenome N/A 2023-03-27 OES302575 Treatment-Day 14-2-Middle freshwater sediment metagenome N/A 2023-03-27 OES302576 Treatment-Day 14-2-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302577 Treatment-Day 14-3-Top freshwater sediment metagenome N/A 2023-03-27 OES302578 Treatment-Day 14-3-Middle freshwater sediment metagenome N/A 2023-03-27 OES302579 Treatment-Day 14-3-Bottom freshwater sediment metagenome N/A 2023-03-27 OES302580 Treatment-Day 14-4-Top freshwater sediment metagenome N/A 2023-03-27 OES302581 Treatment-Day 14-4-Middle freshwater sediment metagenome N/A 2023-03-27 OES302582 Treatment-Day 14-4-Bottom freshwater sediment metagenome N/A 2023-03-27 - Runs
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77
Run ID Run Name Sample Data Num Create Date OER387135 Control-inoculum1 Control-inoculum1 2 2023-03-27 OER387136 Control-inoculum2 Control-inoculum2 2 2023-03-27 OER387137 Control-inoculum3 Control-inoculum3 2 2023-03-27 OER387138 Control-inoculum4 Control-inoculum4 2 2023-03-27 OER387139 Treatment-inoculum1 Treatment-inoculum1 2 2023-03-27 OER387140 Treatment-inoculum2 Treatment-inoculum2 2 2023-03-27 OER387141 Treatment-inoculum3 Treatment-inoculum3 2 2023-03-27 OER387142 Treatment-inoculum4 Treatment-inoculum4 2 2023-03-27 OER387143 Control-Day 2-1-Top Control-Day 2-1-Top 2 2023-03-27 OER387144 Control-Day 2-1-Middle Control-Day 2-1-Middle 2 2023-03-27 OER387145 Control-Day 2-1-Bottom Control-Day 2-1-Bottom 2 2023-03-27 OER387146 Control-Day 2-2-Top Control-Day 2-2-Top 2 2023-03-27 OER387147 Control-Day 2-2-Middle Control-Day 2-2-Middle 2 2023-03-27 OER387148 Control-Day 2-2-Bottom Control-Day 2-2-Bottom 2 2023-03-27 OER387149 Control-Day 2-3-Top Control-Day 2-3-Top 2 2023-03-27 OER387150 Control-Day 2-3-Middle Control-Day 2-3-Middle 2 2023-03-27 OER387151 Control-Day 2-3-Bottom Control-Day 2-3-Bottom 2 2023-03-27 OER387152 Treatment-Day 2-1-Top Treatment-Day 2-1-Top 2 2023-03-27 OER387153 Treatment-Day 2-1-Middle Treatment-Day 2-1-Middle 2 2023-03-27 OER387154 Treatment-Day 2-1-Bottom Treatment-Day 2-1-Bottom 2 2023-03-27 OER387155 Treatment-Day 2-2-Top Treatment-Day 2-2-Top 2 2023-03-27 OER387156 Treatment-Day 2-2-Middle Treatment-Day 2-2-Middle 2 2023-03-27 OER387157 Treatment-Day 2-2-Bottom Treatment-Day 2-2-Bottom 2 2023-03-27 OER387158 Treatment-Day 2-3-Top Treatment-Day 2-3-Top 2 2023-03-27 OER387159 Treatment-Day 2-3-Middle Treatment-Day 2-3-Middle 2 2023-03-27 OER387160 Treatment-Day 2-3-Bottom Treatment-Day 2-3-Bottom 2 2023-03-27 OER387161 Treatment-Day 2-4-Top Treatment-Day 2-4-Top 2 2023-03-27 OER387162 Treatment-Day 2-4-Middle Treatment-Day 2-4-Middle 2 2023-03-27 OER387163 Treatment-Day 2-4-Bottom Treatment-Day 2-4-Bottom 2 2023-03-27 OER387164 Control-Day 7-1-Top Control-Day 7-1-Top 2 2023-03-27 OER387165 Control-Day 7-1-Middle Control-Day 7-1-Middle 2 2023-03-27 OER387166 Control-Day 7-1-Bottom Control-Day 7-1-Bottom 2 2023-03-27 OER387167 Control-Day 7-2-Top Control-Day 7-2-Top 2 2023-03-27 OER387168 Control-Day 7-2-Middle Control-Day 7-2-Middle 2 2023-03-27 OER387169 Control-Day 7-2-Bottom Control-Day 7-2-Bottom 2 2023-03-27 OER387170 Control-Day 7-3-Top Control-Day 7-3-Top 2 2023-03-27 OER387171 Control-Day 7-3-Middle Control-Day 7-3-Middle 2 2023-03-27 OER387172 Control-Day 7-3-Bottom Control-Day 7-3-Bottom 2 2023-03-27 OER387173 Control-Day 7-4-Top Control-Day 7-4-Top 2 2023-03-27 OER387174 Control-Day 7-4-Middle Control-Day 7-4-Middle 2 2023-03-27 OER387175 Control-Day 7-4-Bottom Control-Day 7-4-Bottom 2 2023-03-27 OER387176 Treatment-Day 7-1-Top Treatment-Day 7-1-Top 2 2023-03-27 OER387177 Treatment-Day 7-1-Middle Treatment-Day 7-1-Middle 2 2023-03-27 OER387178 Treatment-Day 7-1-Bottom Treatment-Day 7-1-Bottom 2 2023-03-27 OER387179 Treatment-Day 7-2-Top Treatment-Day 7-2-Top 2 2023-03-27 OER387180 Treatment-Day 7-2-Middle Treatment-Day 7-2-Middle 2 2023-03-27 OER387181 Treatment-Day 7-2-Bottom Treatment-Day 7-2-Bottom 2 2023-03-27 OER387182 Treatment-Day 7-3-Top Treatment-Day 7-3-Top 2 2023-03-27 OER387183 Treatment-Day 7-3-Middle Treatment-Day 7-3-Middle 2 2023-03-27 OER387184 Treatment-Day 7-3-Bottom Treatment-Day 7-3-Bottom 2 2023-03-27 OER387185 Treatment-Day 7-4-Top Treatment-Day 7-4-Top 2 2023-03-27 OER387186 Treatment-Day 7-4-Middle Treatment-Day 7-4-Middle 2 2023-03-27 OER387187 Treatment-Day 7-4-Bottom Treatment-Day 7-4-Bottom 2 2023-03-27 OER387188 Control-Day 14-1-Top Control-Day 14-1-Top 2 2023-03-27 OER387189 Control-Day 14-1-Middle Control-Day 14-1-Middle 2 2023-03-27 OER387190 Control-Day 14-1-Bottom Control-Day 14-1-Bottom 2 2023-03-27 OER387191 Control-Day 14-2-Top Control-Day 14-2-Top 2 2023-03-27 OER387192 Control-Day 14-2-Middle Control-Day 14-2-Middle 2 2023-03-27 OER387193 Control-Day 14-2-Bottom Control-Day 14-2-Bottom 2 2023-03-27 OER387194 Control-Day 14-3-Top Control-Day 14-3-Top 2 2023-03-27 OER387195 Control-Day 14-3-Middle Control-Day 14-3-Middle 2 2023-03-27 OER387196 Control-Day 14-3-Bottom Control-Day 14-3-Bottom 2 2023-03-27 OER387197 Control-Day 14-4-Top Control-Day 14-4-Top 2 2023-03-27 OER387198 Control-Day 14-4-Middle Control-Day 14-4-Middle 2 2023-03-27 OER387199 Control-Day 14-4-Bottom Control-Day 14-4-Bottom 2 2023-03-27 OER387200 Treatment-Day 14-1-Top Treatment-Day 14-1-Top 2 2023-03-27 OER387201 Treatment-Day 14-1-Middle Treatment-Day 14-1-Middle 2 2023-03-27 OER387202 Treatment-Day 14-1-Bottom Treatment-Day 14-1-Bottom 2 2023-03-27 OER387203 Treatment-Day 14-2-Top Treatment-Day 14-2-Top 2 2023-03-27 OER387204 Treatment-Day 14-2-Middle Treatment-Day 14-2-Middle 2 2023-03-27 OER387205 Treatment-Day 14-2-Bottom Treatment-Day 14-2-Bottom 2 2023-03-27 OER387206 Treatment-Day 14-3-Top Treatment-Day 14-3-Top 2 2023-03-27 OER387207 Treatment-Day 14-3-Middle Treatment-Day 14-3-Middle 2 2023-03-27 OER387208 Treatment-Day 14-3-Bottom Treatment-Day 14-3-Bottom 2 2023-03-27 OER387209 Treatment-Day 14-4-Top Treatment-Day 14-4-Top 2 2023-03-27 OER387210 Treatment-Day 14-4-Middle Treatment-Day 14-4-Middle 2 2023-03-27 OER387211 Treatment-Day 14-4-Bottom Treatment-Day 14-4-Bottom 2 2023-03-27
Author Information
- Create Date
- 2023-03-27
- Last Modified
- 2023-03-27
- Submission
- Meiying Xu
- Guangdong Institute of Microbiology