General Information
- Project ID
- OEP001698
- Project Name
- Microbial communities of the Mariana Trench and Mussau Trench
- Description
- This study presents the first exploration on abundance, species composition and spatial variations of the total and alive microbial community in 1 cm sectioned sediment cores from the deepest points of the Mariana (depth = 10853 m) and Mussau trenches (depth = 7011 m), using high-throughput sequencing on amplicons of both 16S rRNA gene and 16S rRNA. 16S rRNA gene and 16S rRNA samples were amplified with a barcoded primer set 515F/907R targeting V4–V5 hypervariable regions of the prokaryotic community.
- Publications
-
Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches
Liu R, Wang Z, Wang L, Li Z, Fang J, Wei X, Wei W, Cao J, Wei Y and Xie Z (2020) Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches. Front. Microbiol. 11:1521. doi: 10.3389/fmicb.2020.01521
(PMID: 32765444) (DOI: 10.3389/fmicb.2020.01521) - Related Links
- https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP214992
Project information
- Experiments
- 2
- Samples
- 84
Sample ID Sample Name Sample Subject Type Organism Tissue Create Date OES066892 1_MST_0_2cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066893 1_MST_0_2cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066894 1_MST_0_2cmDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066895 1_MST_0_2cmDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066896 1_MT_0_2cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066897 1_MT_0_2cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066898 2_MST_2_3cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066899 2_MST_2_3cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066900 2_MST_4_5cmDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066901 2_MST_4_5cmDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066902 2_MT_2_3cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066903 2_MT_2_3cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066904 3_MST_3_4cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066905 3_MST_3_4cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066906 3_MST_7_8cmDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066907 3_MST_7_8cmDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066908 3_MT_3_4cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066909 3_MT_3_4cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066910 4_MST_4_5cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066911 4_MST_4_5cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066912 4_MST_9_10cmDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066913 4_MST_9_10cmDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066914 4_MT_4_5cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066915 4_MT_4_5cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066916 5_MST_5_6cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066917 5_MST_5_6cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066918 5_MT_5_6cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066919 5_MT_5_6cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066920 6_MST_6_7cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066921 6_MST_6_7cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066922 6_MT_6_7cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066923 6_MT_6_7cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066924 7_MST_7_8cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066925 7_MST_7_8cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066926 7_MT_7_8cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066927 7_MT_7_8cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066928 8_MST_8_9cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066929 8_MST_8_9cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066930 8_MT_8_9cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066931 8_MT_8_9cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066932 9_MST_9_10cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066933 9_MST_9_10cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES066934 9_MT_9_10cmDNA.1.fq Environment non-host marine metagenome N/A 2021-01-19 OES066935 9_MT_9_10cmDNA.2.fq Environment non-host marine metagenome N/A 2021-01-19 OES067054 5_MST_0_2cmcDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067055 5_MST_0_2cmcDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067056 6_MST_4_5cmcDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067057 6_MST_4_5cmcDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067058 7_MST_7_8cmcDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067059 7_MST_7_8cmcDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067060 8_MST_9_10cmcDNA_2.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067061 8_MST_9_10cmcDNA_2.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067062 10_MST_0_2cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067063 10_MST_0_2cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067064 10_MT_0_2cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067065 10_MT_0_2cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067066 11_MST_2_3cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067067 11_MST_2_3cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067068 11_MT_2_3cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067069 11_MT_2_3cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067070 12_MST_3_4cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067071 12_MST_3_4cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067072 12_MT_3_4cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067073 12_MT_3_4cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067074 13_MST_4_5cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067075 13_MST_4_5cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067076 13_MT_4_5cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067077 13_MT_4_5cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067078 14_MST_5_6cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067079 14_MST_5_6cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067080 14_MT_5_6cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067081 14_MT_5_6cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067082 15_MST_6_7cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067083 15_MST_6_7cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067084 15_MT_7_8cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067085 15_MT_7_8cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067086 16_MST_7_8cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067087 16_MST_7_8cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067088 16_MT_9_10cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067089 16_MT_9_10cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067090 17_MST_8_9cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067091 17_MST_8_9cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 OES067092 18_MST_9_10cmcDNA.1.fq Environment non-host marine metagenome N/A 2021-01-20 OES067093 18_MST_9_10cmcDNA.2.fq Environment non-host marine metagenome N/A 2021-01-20 - Runs
-
84
Run ID Run Name Experiment Sample Data Num Create Date OER100656 1_MST_0_2cmDNA.1.fq OEX012009 OES066892 1 2021-01-20 OER100657 1_MST_0_2cmDNA.2.fq OEX012009 OES066893 1 2021-01-20 OER100658 1_MST_0_2cmDNA_2.1.fq OEX012009 OES066894 1 2021-01-20 OER100659 1_MST_0_2cmDNA_2.2.fq OEX012009 OES066895 1 2021-01-20 OER100660 1_MT_0_2cmDNA.1.fq OEX012009 OES066896 1 2021-01-20 OER100661 1_MT_0_2cmDNA.2.fq OEX012009 OES066897 1 2021-01-20 OER100662 2_MST_2_3cmDNA.1.fq OEX012009 OES066898 1 2021-01-20 OER100663 2_MST_2_3cmDNA.2.fq OEX012009 OES066899 1 2021-01-20 OER100664 2_MST_4_5cmDNA_2.1.fq OEX012009 OES066900 1 2021-01-20 OER100665 2_MST_4_5cmDNA_2.2.fq OEX012009 OES066901 1 2021-01-20 OER100666 2_MT_2_3cmDNA.1.fq OEX012009 OES066902 1 2021-01-20 OER100667 2_MT_2_3cmDNA.2.fq OEX012009 OES066903 1 2021-01-20 OER100668 3_MST_3_4cmDNA.1.fq OEX012009 OES066904 1 2021-01-20 OER100669 3_MST_3_4cmDNA.2.fq OEX012009 OES066905 1 2021-01-20 OER100670 3_MST_7_8cmDNA_2.1.fq OEX012009 OES066906 1 2021-01-20 OER100671 3_MST_7_8cmDNA_2.2.fq OEX012009 OES066907 1 2021-01-20 OER100672 3_MT_3_4cmDNA.1.fq OEX012009 OES066908 1 2021-01-20 OER100673 3_MT_3_4cmDNA.2.fq OEX012009 OES066909 1 2021-01-20 OER100674 4_MST_4_5cmDNA.1.fq OEX012009 OES066910 1 2021-01-20 OER100675 4_MST_4_5cmDNA.2.fq OEX012009 OES066911 1 2021-01-20 OER100676 4_MST_9_10cmDNA_2.1.fq OEX012009 OES066912 1 2021-01-20 OER100677 4_MST_9_10cmDNA_2.2.fq OEX012009 OES066913 1 2021-01-20 OER100678 4_MT_4_5cmDNA.1.fq OEX012009 OES066914 1 2021-01-20 OER100679 4_MT_4_5cmDNA.2.fq OEX012009 OES066915 1 2021-01-20 OER100680 5_MST_5_6cmDNA.1.fq OEX012009 OES066916 1 2021-01-20 OER100681 5_MST_5_6cmDNA.2.fq OEX012009 OES066917 1 2021-01-20 OER100682 5_MT_5_6cmDNA.1.fq OEX012009 OES066918 1 2021-01-20 OER100683 5_MT_5_6cmDNA.2.fq OEX012009 OES066919 1 2021-01-20 OER100684 6_MST_6_7cmDNA.1.fq OEX012009 OES066920 1 2021-01-20 OER100685 6_MST_6_7cmDNA.2.fq OEX012009 OES066921 1 2021-01-20 OER100686 6_MT_6_7cmDNA.1.fq OEX012009 OES066922 1 2021-01-20 OER100687 6_MT_6_7cmDNA.2.fq OEX012009 OES066923 1 2021-01-20 OER100688 7_MST_7_8cmDNA.1.fq OEX012009 OES066924 1 2021-01-20 OER100689 7_MST_7_8cmDNA.2.fq OEX012009 OES066925 1 2021-01-20 OER100690 7_MT_7_8cmDNA.1.fq OEX012009 OES066926 1 2021-01-20 OER100691 7_MT_7_8cmDNA.2.fq OEX012009 OES066927 1 2021-01-20 OER100692 8_MST_8_9cmDNA.1.fq OEX012009 OES066928 1 2021-01-20 OER100693 8_MST_8_9cmDNA.2.fq OEX012009 OES066929 1 2021-01-20 OER100694 8_MT_8_9cmDNA.1.fq OEX012009 OES066930 1 2021-01-20 OER100695 8_MT_8_9cmDNA.2.fq OEX012009 OES066931 1 2021-01-20 OER100696 9_MST_9_10cmDNA.1.fq OEX012009 OES066932 1 2021-01-20 OER100697 9_MST_9_10cmDNA.2.fq OEX012009 OES066933 1 2021-01-20 OER100698 9_MT_9_10cmDNA.1.fq OEX012009 OES066934 1 2021-01-20 OER100699 9_MT_9_10cmDNA.2.fq OEX012009 OES066935 1 2021-01-20 OER100616 5_MST_0_2cmcDNA_2.1.fq OEX012014 OES067054 1 2021-01-20 OER100617 5_MST_0_2cmcDNA_2.2.fq OEX012014 OES067055 1 2021-01-20 OER100618 6_MST_4_5cmcDNA_2.1.fq OEX012014 OES067056 1 2021-01-20 OER100619 6_MST_4_5cmcDNA_2.2.fq OEX012014 OES067057 1 2021-01-20 OER100620 7_MST_7_8cmcDNA_2.1.fq OEX012014 OES067058 1 2021-01-20 OER100621 7_MST_7_8cmcDNA_2.2.fq OEX012014 OES067059 1 2021-01-20 OER100622 8_MST_9_10cmcDNA_2.1.fq OEX012014 OES067060 1 2021-01-20 OER100623 8_MST_9_10cmcDNA_2.2.fq OEX012014 OES067061 1 2021-01-20 OER100624 10_MST_0_2cmcDNA.1.fq OEX012014 OES067062 1 2021-01-20 OER100625 10_MST_0_2cmcDNA.2.fq OEX012014 OES067063 1 2021-01-20 OER100626 10_MT_0_2cmcDNA.1.fq OEX012014 OES067064 1 2021-01-20 OER100627 10_MT_0_2cmcDNA.2.fq OEX012014 OES067065 1 2021-01-20 OER100628 11_MST_2_3cmcDNA.1.fq OEX012014 OES067066 1 2021-01-20 OER100629 11_MST_2_3cmcDNA.2.fq OEX012014 OES067067 1 2021-01-20 OER100630 11_MT_2_3cmcDNA.1.fq OEX012014 OES067068 1 2021-01-20 OER100631 11_MT_2_3cmcDNA.2.fq OEX012014 OES067069 1 2021-01-20 OER100632 12_MST_3_4cmcDNA.1.fq OEX012014 OES067070 1 2021-01-20 OER100633 12_MST_3_4cmcDNA.2.fq OEX012014 OES067071 1 2021-01-20 OER100634 12_MT_3_4cmcDNA.1.fq OEX012014 OES067072 1 2021-01-20 OER100635 12_MT_3_4cmcDNA.2.fq OEX012014 OES067073 1 2021-01-20 OER100636 13_MST_4_5cmcDNA.1.fq OEX012014 OES067074 1 2021-01-20 OER100637 13_MST_4_5cmcDNA.2.fq OEX012014 OES067075 1 2021-01-20 OER100638 13_MT_4_5cmcDNA.1.fq OEX012014 OES067076 1 2021-01-20 OER100639 13_MT_4_5cmcDNA.2.fq OEX012014 OES067077 1 2021-01-20 OER100640 14_MST_5_6cmcDNA.1.fq OEX012014 OES067078 1 2021-01-20 OER100641 14_MST_5_6cmcDNA.2.fq OEX012014 OES067079 1 2021-01-20 OER100642 14_MT_5_6cmcDNA.1.fq OEX012014 OES067080 1 2021-01-20 OER100643 14_MT_5_6cmcDNA.2.fq OEX012014 OES067081 1 2021-01-20 OER100644 15_MST_6_7cmcDNA.1.fq OEX012014 OES067082 1 2021-01-20 OER100645 15_MST_6_7cmcDNA.2.fq OEX012014 OES067083 1 2021-01-20 OER100646 15_MT_7_8cmcDNA.1.fq OEX012014 OES067084 1 2021-01-20 OER100647 15_MT_7_8cmcDNA.2.fq OEX012014 OES067085 1 2021-01-20 OER100648 16_MST_7_8cmcDNA.1.fq OEX012014 OES067086 1 2021-01-20 OER100649 16_MST_7_8cmcDNA.2.fq OEX012014 OES067087 1 2021-01-20 OER100650 16_MT_9_10cmcDNA.1.fq OEX012014 OES067088 1 2021-01-20 OER100651 16_MT_9_10cmcDNA.2.fq OEX012014 OES067089 1 2021-01-20 OER100652 17_MST_8_9cmcDNA.1.fq OEX012014 OES067090 1 2021-01-20 OER100653 17_MST_8_9cmcDNA.2.fq OEX012014 OES067091 1 2021-01-20 OER100654 18_MST_9_10cmcDNA.1.fq OEX012014 OES067092 1 2021-01-20 OER100655 18_MST_9_10cmcDNA.2.fq OEX012014 OES067093 1 2021-01-20
Author Information
- Create Date
- 2021-01-19
- Last Modified
- 2021-01-19
- Submission
- Liu Rulong
- Shanghai Ocean University