CircID: TC-hsa-ABCA3_0027
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr16:2328453~2329854
Xref:
circAtlas: hsa-ABCA3_0002
circBase: hsa_circ_0037517
circRNADb: hsa_circ_19562
deepbase2: hsa-circRNA10948-6
circpedia2: HSA_CIRCpedia_17061
circBase: hsa_circ_0037517
circRNADb: hsa_circ_19562
deepbase2: hsa-circRNA10948-6
circpedia2: HSA_CIRCpedia_17061
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 2.769761
MS Q-Value:
|
| ORF | 1.0 | |
| IRES sequence | 0.01763 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.75213 | |
| m6A sites | 1.0 | |
| MS evidence | 0.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
GTGCTGGAGAGTCATGCCTGTGAGCCCTGGGCACCTCCTGATGTCCTGCGAGGTCACGGTGTTCCCAAACCTCAGGGTTGCCCTGCCCCACTCCAGAGGCTCTCAGGCCCCACCCCGGAGCCCTCTGTGCGGAGCCGCCTCCTCCTGGCCAGTTCCCCAGTAGTCCTGAAGGGAGACCTGCTGTGTGGAGCCTCTTCTGGGACCCAGCCATGAGTGTGGAGCTGAGCAACTGAACCTGAAACTCTTCCACTGTGAGTCAAGGAGGCTTTTCCGCACATGAAGGACGCTGAGCGGGAAGGACTCCTCTCTGCCTGCAGTTGTAGCGAGTGGACCAGCACCAGGGGCTCTCTAGACTGCCCCTCCTCCATCGCCTTCCCTGCCTCTCCAGGACAGAGCAGCCACGTCTGCACACCTCGCCCTCTTTACACTCAGTTTTCAGAGCACGTTTCTCCTATTTCCTGCGGGTTGCAGCGCCTACTTGAACTTACTCAGACCACCTACTTCTCTAGCAG
Exons
- exon1:2329854~2329648
- exon2:2328757~2328453
m6A sites
- 2328665
- 2328634
- 2328612
- 2328575
IRES sequence
- 2328737~2328732
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 277
- Stop: 163
- Length: 399
- Translation cycles: 1
ATGAAGGACGCTGAGCGGGAAGGACTCCTCTCTGCCTGCAGTTGTAGCGAGTGGACCAGCACCAGGGGCTCTCTAGACTGCCCCTCCTCCATCGCCTTCCCTGCCTCTCCAGGACAGAGCAGCCACGTCTGCACACCTCGCCCTCTTTACACTCAGTTTTCAGAGCACGTTTCTCCTATTTCCTGCGGGTTGCAGCGCCTACTTGAACTTACTCAGACCACCTACTTCTCTAGCAGGTGCTGGAGAGTCATGCCTGTGAGCCCTGGGCACCTCCTGATGTCCTGCGAGGTCACGGTGTTCCCAAACCTCAGGGTTGCCCTGCCCCACTCCAGAGGCTCTCAGGCCCCACCCCGGAGCCCTCTGTGCGGAGCCGCCTCCTCCTGGCCAGTTCCCCAGTAG