CircID: TC-hsa-ATP1A1_0006
CircRNA information
Taxonomy:
Genome Version:
hg38
Location:
chr1:116384042~116388244
Evidences
| Ribosome/polysome profiling | 0.0 |
Evidence score: 3.146568
MS Q-Value: 0.00317
|
| ORF | 1.0 | |
| IRES sequence | 0.35192 | |
| Translation initiation site | 0.0 | |
| SeqComp | 0.79465 | |
| m6A sites | 0.0 | |
| MS evidence | 1.0 |
Other evidences Upload
| File | Author | Date |
|---|
Structure
IRES
m6A
TIS
circRNA sequence
CTGTTTCAGAACAAGGTGATAAAAAGGGCAAAAAGGGCAAAAAAGACAGGGACATGGATGAACTGAAGAAAGAAGTTTCTATGGATGATCATAAACTTAGCCTTGATGAACTTCATCGTAAATATGGAACAGACTTGAGCCGGGGATTAACATCTGCTCGTGCAGCTGAGATCCTGGCGCGAGATGGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAATGGATCAAGTTTTGTCGGCAGCTCTTTGGGGGGTTCTCAATGTTACTGTGGATTGGAGCGATTCTTTGTTTCTTGGCTTATAGCATCCAAGCTGCTACAGAAGAGGAACCTCAAAACGATAATCTGTACCTGGGTGTGGTGCTATCAGCCGTTGTAATCATAACTGGTTGCTTCTCCTACTATCAAGAAGCTAAAAGTTCAAAGATCATGGAATCCTTCAAAAACATGGTCCCTCAG
Exons
- exon1:116384042~116384124
- exon2:116384783~116384842
- exon3:116387288~116387491
- exon4:116388131~116388244
IRES sequence
- 116384060~116384066
- 116384070~116384075
- 116384079~116384088
- 116384102~116384116
- 116384790~116384795
- 116384818~116384824
- 116387372~116387377
- 116387467~116387472
- 116387488~116388132
- 116388189~116388197
- 116388226~116388234
circRNA specific ORFs
Attribute
ORF struct
circRNA sequence
Amino acid sequence
MS evidence
- Start: 388
- Stop: 19
- Length: 93
- Translation cycles: 1
- Start: 54
- Stop: 66
- Length: 474
- Translation cycles: 1
ATGGATGAACTGAAGAAAGAAGTTTCTATGGATGATCATAAACTTAGCCTTGATGAACTTCATCGTAAATATGGAACAGACTTGAGCCGGGGATTAACATCTGCTCGTGCAGCTGAGATCCTGGCGCGAGATGGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAATGGATCAAGTTTTGTCGGCAGCTCTTTGGGGGGTTCTCAATGTTACTGTGGATTGGAGCGATTCTTTGTTTCTTGGCTTATAGCATCCAAGCTGCTACAGAAGAGGAACCTCAAAACGATAATCTGTACCTGGGTGTGGTGCTATCAGCCGTTGTAATCATAACTGGTTGCTTCTCCTACTATCAAGAAGCTAAAAGTTCAAAGATCATGGAATCCTTCAAAAACATGGTCCCTCAGCTGTTTCAGAACAAGGTGATAAAAAGGGCAAAAAGGGCAAAAAAGACAGGGACATGGATGAACTGA