TransCirc

CircID: TC-hsa-BRAT1_0004

CircRNA information

Taxonomy:

Homo sapiens

Genome Version:

hg38

Location:

chr7:2554305~2554447

Gene:

BRAT1

Gene type:

protein_coding

Strand:

exons:

ORFS:

Xref:

circAtlas: hsa-BRAT1_0006
circBase: hsa_circ_0079197
deepbase2: hsa-circRNA15012-5
circpedia2: HSA_CIRCpedia_57744

Evidences

Ribosome/polysome profiling	0.0	Evidence score: 2.912122 MS Q-Value:
ORF	1.0
IRES sequence	0.0173
Translation initiation site	1.0
SeqComp	0.89482
m6A sites	0.0
MS evidence	0.0

Other evidences Upload

File	Author	Date

Structure

IRES

m6A

TIS

circRNA sequence

GGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGAG

Exons

exon1:2554447~2554305

IRES sequence

2554326~2554321

Translation initiation site

2554431~2554429

circRNA specific ORFs

Attribute

ORF struct

circRNA sequence

Amino acid sequence

MS evidence

Start: 17
Stop: 68
Length: 195
Translation cycles: 1

ATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGAGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAG

MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGGPAASPWTQNAPSCSRLSVLFW*

Start: 90
Stop: 93
Length: 147
Translation cycles: 1

ATGACACCTGTTTGGAGAAGCTCCTGGACTGGTTTAAAACGGTCACTGAAGGAGGGCCTGCGGCCTCACCATGGACCCAGAATGCGCCCAGCTGCTCCCGGCTCTCTGTGCTGTTCTGGTAGATCCCAGGCAGCCGGTGGCAGATGA

MTPVWRSSWTGLKRSLKEGLRPHHGPRMRPAAPGSLCCSGRSQAAGGR*